Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0938 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAAGCCAATTTATAATCTTGATGAGTCAGATGATGATGATTTTTTGCTTAAAAAACCCGGGACAAGTCAGGAAAAGTTTGAGAGGATAGACAGAAGTGATGCGAAAGAGGATTTATGTCAAGCCTGTGGTGAAAGAGGAGATCTCCTGAGTTGTGCAACTTGCAACTATGCTTACCATTCTAGGTGTTTACTTCCACCACTGAAAGGTCCTGCTCCTGACAACTGGAGGTGCCCTGAATGTGTTAGCCCCCTTACTGATATTGATAAGTTATTAGACTGTGAGATGCGCCCTACTGTAGATGGTGATGGTGACAGTGACACCACAAAATCTGGGTCCAAGCAAATTTTTGTTAAACAATACCTTGTTAAGTGGAAGGGACTATCATATCTGCACTGTACATGGGTGCCAGAGAAAGATTTTCTGAAAGCTTTTAAGAATTATCCTCGTCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCCTCCAATACTTCAGACGAAGACTTTGTTGCCATTCGTCCTGAATGGACTACAGTTGATCGAATAATTGCTTGCAGGGGTGATGATGATGAGAGGGAATATCTGGTGAAGTGGAAAGAGCTTCCATATGATGAATGTTATTGGGAATCTGAGTCTGATATATCTGCATTTCAGCCGGAAATAGAAAGATTCAATCGATTTCGTTCTAGATCGAGCAAACTTGCTTCCATTAAGCAAAAAAGCCGTGTTAATGATGACAATGAATTTAAGAAACAGCAGAAAGAGTTTCAACAGTATGAACATAGCCCCAAGTTTCTTTCAGGTTCTCTACACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAAACACATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTTGAAGAGGGTGTTTCTGCACATCCACATCTGGTGGTTGCTCCACTTTCAACGCTGCGAAACTGGGAACGTGAATTTGCAACATGGGCCCCTCAAATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGTAGTGTTATCAGAGAATATGAATTTTACTTTCCCAAGAAAGTGAAGAAGAATAAGAAAAAGAAATCTAGTCAAATAGTTAGTGAAAGTAAGCATGACAGGATTAAGTTTGATGTCCTTTTGACATCATACGAGATGATCAACTTAGACACAACATCATTAAAACCTATAAAATGGGAGTGCATGATTGTTGATGAAGGTCACCGCCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTACCAGACATCGTGTGCTCTTGACTGGAACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGCAAGTTTAGAGGAATTCCAAGAAGAATTCAAGGATATCAATCAAGAGGAACAGATCTCAAGGCTTCATAAAATGCTGGCCCCGCATCTTCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCCAAAAAGGAACTTATTCTACGGGTTGATTTGAGCAGCAAGCAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGCCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATGCTTACATGTTAGAAGGAGTTGAGCCAGATATTGACGACCCAAAAGAAGCTTTCAAACAATTGCTGGAATCGTCAGGGAAGTTGCACTTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACACAGAGTTCTCATATACTCCCAATTTCAGCACATGCTTGATTTGCTTGAAGATTACTGCTCTTACAAGAAATGGCATTATGAAAGGATAGATGGGAAGGTTGGTGGAGCTGAAAGACAAATACGGATAGATCGTTTTAATGCCAAGAATTCTTCAAGATTTTGCTTTCTGCTTTCTACAAGAGCTGGGGGTTTGGGGATAAACCTTGCAACTGCTGACACAGTTGTTATATATGACAGTGATTGGAATCCTCATGCTGACTTACAAGCAATGGCTAGAGCTCATCGACTTGGACAAACCAACAAGGTGTTGATTTATAGGCTTATAACGCGGGGAACAATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACACCTTGTTGTAGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATACGATATGGCTCAAAGGAGTTATTTTCAGATGAGAATGATGAAGCAGGAAAATCCCGTCAAATCCATTATGATGCAGCTGCTATCGATAGGTTGCTGGATCGTGACCAAGTTGTAGATGAAGAAACTACTTTGGATGATGAAGATGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAGGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAAACCGTTAATAGTTCAGAAAGAACACATTACTGGGAAGAGTTGTTAAAAGACAAGTTTCAGGAGCATAAAGTTGAGGAGTTTAATGCTTTGGGCAAAGGGAAGCGAAACCGGAAATTGATGGTTTCTGTTGAGGAGGACGACCTTGCTGGCCTTGAAGATGTAAGCTCTGACGAAGACGACAATTATGAAGCTGAGCTTACTGACGGTGATTCAAATTCCACAGGAACTACTACTAGTAGAAGGCCATATAAGAAAAAAGCACGTACAGCGGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTTAGAGTACTTGGTTTTAATCAAAATCAGAGGGCTGCCTTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTAGTTCGCGCATGAAACAAAAGACTTATGAAGAAATTAAAGATTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCTCTACGTTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGACGTGCTTGTAAGGATTGCAGTCCTGCTCTTGATAAGGGACAAAGTGAGGTTTGCATCAGAACATCCTCAAACTCCACTCTTTTCAGATGACATCTTATTACGTTATCCAGGTTTGAAGGGTATAAGGAAGTGGAAGGAGGAGCACGATTTTATGCTACTGCGTGCTGTGTTAAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGATCATCTGCCAGGAGTTGAATCTTCCCGTTATAAATTTACCTGGACCCGGACAAGTTGGTTCTCACGTACAAAATGGTCCAAATTTGGCAAATGCAGAAATACCCAGCAGTGAATCCAGGGAAAATGGTGGAAGTGCCATAGCAGCTGATGGGGCACAAGGTTCAGGTGATGCTAGGAACCAAACACAGCTATATCAAGACTCGTCCATGTTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCAGGTGAAGTAACCAACGAAGAACTTAAAAGTGAACCCAAGTCTACCACTATTCCAAGTTATAAATCAGTAGATACTGATACCAAAATGATTGATCAATTGCCACAAGTAGAAACAATAGCTCAAGAAGATGTTTCGGTTGCTTGTGATAGTGATCCAAATCGATTGGAATTAGTTCGGCTTTACAATGAGATGTGCAAGGTAGTTGAGGAAAACCCCATGGATTTAGTTCAAGCGTCATTGGCAAGAGAACCGGCAGAGGCCAACGCGGTGAAGAAGTGCCCGCCACTAGAAACCATCTGTGAAGATATCAACAGAATTCTAACACCCACAGTAGAGCAGCCTGTTGCAGAAACTCCAGTAATAAATTCAGATAACAAATCAGAGGCAATATCACACAGTGAAGTTTTGGGGTCCAAATCACCGCCTAACCCTCAAAATGACTGCAAACCTGATTCTTTAGCAAACGACGAGACAAAAGATATGGTGATAGACTCTGCGGAGAAAAAGGAAAGTAATACAGCGATGGATGATAGTAGCAATGCTGAGTTGAATGAGAACACACAGAATTCTGGCGCTGGAGTCATTGTATTGGATGAGTAA 4278 0.4091 MSSLVERLRVRSDRKPIYNLDESDDDDFLLKKPGTSQEKFERIDRSDAKEDLCQACGERGDLLSCATCNYAYHSRCLLPPLKGPAPDNWRCPECVSPLTDIDKLLDCEMRPTVDGDGDSDTTKSGSKQIFVKQYLVKWKGLSYLHCTWVPEKDFLKAFKNYPRLKTKVNNFHRQMASSNTSDEDFVAIRPEWTTVDRIIACRGDDDEREYLVKWKELPYDECYWESESDISAFQPEIERFNRFRSRSSKLASIKQKSRVNDDNEFKKQQKEFQQYEHSPKFLSGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVSAHPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARSVIREYEFYFPKKVKKNKKKKSSQIVSESKHDRIKFDVLLTSYEMINLDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFASLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIDDPKEAFKQLLESSGKLHLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKKWHYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFSDENDEAGKSRQIHYDAAAIDRLLDRDQVVDEETTLDDEDEDGFLKAFKVANFEYVDEAEAAAEEAAQKRAMETVNSSERTHYWEELLKDKFQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDEDDNYEAELTDGDSNSTGTTTSRRPYKKKARTADSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFSSRMKQKTYEEIKDYGTLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVRFASEHPQTPLFSDDILLRYPGLKGIRKWKEEHDFMLLRAVLKHGYGRWQAIVDDKDLKIQEIICQELNLPVINLPGPGQVGSHVQNGPNLANAEIPSSESRENGGSAIAADGAQGSGDARNQTQLYQDSSMLYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELKSEPKSTTIPSYKSVDTDTKMIDQLPQVETIAQEDVSVACDSDPNRLELVRLYNEMCKVVEENPMDLVQASLAREPAEANAVKKCPPLETICEDINRILTPTVEQPVAETPVINSDNKSEAISHSEVLGSKSPPNPQNDCKPDSLANDETKDMVIDSAEKKESNTAMDDSSNAELNENTQNSGAGVIVLDE* 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0938 1425 Gene3D - 283 530 IPR038718 -
Mal2g0938 1425 MobiDBLite consensus disorder prediction 906 923 - -
Mal2g0938 1425 Pfam CHD subfamily II, SANT-like domain 934 1068 IPR009462 GO:0003677|GO:0006338
Mal2g0938 1425 MobiDBLite consensus disorder prediction 1138 1159 - -
Mal2g0938 1425 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 486 IPR014001 -
Mal2g0938 1425 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 614 775 IPR001650 -
Mal2g0938 1425 Pfam PHD-finger 53 95 IPR019787 -
Mal2g0938 1425 Gene3D - 190 242 - -
Mal2g0938 1425 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1056 - -
Mal2g0938 1425 SUPERFAMILY Chromo domain-like 180 243 IPR016197 -
Mal2g0938 1425 Gene3D - 531 755 IPR027417 -
Mal2g0938 1425 MobiDBLite consensus disorder prediction 1138 1175 - -
Mal2g0938 1425 Pfam CHD subfamily II, DUF1087 846 904 IPR009463 -
Mal2g0938 1425 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Mal2g0938 1425 SMART helicmild6 640 724 IPR001650 -
Mal2g0938 1425 Gene3D - 1038 1215 - -
Mal2g0938 1425 Pfam Chromo (CHRromatin Organisation MOdifier) domain 119 160 IPR023780 -
Mal2g0938 1425 Pfam Chromo (CHRromatin Organisation MOdifier) domain 194 242 IPR023780 -
Mal2g0938 1425 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Mal2g0938 1425 Pfam SNF2-related domain 306 587 IPR000330 GO:0005524|GO:0140658
Mal2g0938 1425 CDD SF2_C_SNF 609 735 - -
Mal2g0938 1425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 99 IPR013083 -
Mal2g0938 1425 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1056 - -
Mal2g0938 1425 ProSiteProfiles Chromo and chromo shadow domain profile. 193 242 IPR000953 -
Mal2g0938 1425 MobiDBLite consensus disorder prediction 906 955 - -
Mal2g0938 1425 ProSiteProfiles Chromo and chromo shadow domain profile. 99 183 IPR000953 -
Mal2g0938 1425 MobiDBLite consensus disorder prediction 1378 1401 - -
Mal2g0938 1425 SMART DUF1087_2 841 907 IPR009463 -
Mal2g0938 1425 MobiDBLite consensus disorder prediction 1342 1377 - -
Mal2g0938 1425 CDD CD1_tandem 101 173 - -
Mal2g0938 1425 MobiDBLite consensus disorder prediction 1402 1419 - -
Mal2g0938 1425 Gene3D - 100 189 - -
Mal2g0938 1425 SUPERFAMILY Chromo domain-like 65 177 IPR016197 -
Mal2g0938 1425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 521 IPR027417 -
Mal2g0938 1425 Pfam Helicase conserved C-terminal domain 612 724 IPR001650 -
Mal2g0938 1425 SMART ultradead3 282 497 IPR014001 -
Mal2g0938 1425 SMART chromo_7 191 245 IPR000953 -
Mal2g0938 1425 SMART chromo_7 98 166 IPR000953 -
Mal2g0938 1425 CDD CD2_tandem 191 242 - -
Mal2g0938 1425 MobiDBLite consensus disorder prediction 1342 1425 - -
Mal2g0938 1425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 782 IPR027417 -
Mal2g0938 1425 SMART PHD_3 52 95 IPR001965 -
Mal2g0938 1425 SMART DUF1086_2 913 1071 IPR009462 GO:0003677|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0938 Mal-Chr2 10901400 10921210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0938 603 775 RAD5 or RAD16-like Gene Family AT5G22750 32.948 8.68e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal2g0938 SNF2_N 3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0938 K11643 - gmx:100790230 2426.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5587 1 131588656 131601522 Mal2g0938 2 10901400 10921210 PCT