Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0876 ATGGTACAACAAACAAAGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCTTTGTTAAAGAGAAGGGTGTGGTTAGGGACATTTGAGACAGCAGAGGCAGCAGCAAGGGCATATGATCAAGCTGCAATTTTGATGAATGGTCAAAGTGCAAAGACTAATTTCCCTGTGTCAAAGAATCAAGGTGAAGAAGTTGCTATTGACACCCCTTCTGATGACTCTTTCTTGTCTCCCAAGGCTCTCTCTGAGCTACTCAGCACAAAGCTTAGAAAGTATTGCAAAGACCCTTCTCCATCACTCACTTGTTTGAGGCTAGATAATGATAATTCTCACATTGGAGTGTGGCAAAAAAGAGCTGGACCACATTCTGATTCTAATTGGGTCATGAGGGTTGAACTTGGTGGAAAGAAAAAGACTATAGAATCAGAGATAGGGTCAACAGAACACATTATTGATGGTGGTAATAATGGTAATGCTGATAATGAAAATAATAGGGTGGTAGTAGAAGAAGAGGAAAGAGTTGCTTTGCAGATGATTGAAGAGTTACTTAATTGGAACTATCCATGTGGTTCAACTTCAAGTAATTAA 612 0.4118 MVQQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQSAKTNFPVSKNQGEEVAIDTPSDDSFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDNDNSHIGVWQKRAGPHSDSNWVMRVELGGKKKTIESEIGSTEHIIDGGNNGNADNENNRVVVEEEERVALQMIEELLNWNYPCGSTSSN* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0876 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 200 - -
Mal2g0876 203 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Mal2g0876 203 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Mal2g0876 203 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Mal2g0876 203 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Mal2g0876 203 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Mal2g0876 203 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Mal2g0876 203 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 200 - -
Mal2g0876 203 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Mal2g0876 203 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0876 Mal-Chr2 10142490 10143244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0876 4 196 AP2-EREBP Transcription Factor Family AT5G25390 62.176 5.50e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal2g0876 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0876 - - lang:109326202 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0876 2 10142490 10143244 Mal2g0876 2 10142490 10143244 ECH
Mal2g0876 2 10142490 10143244 Mal1g5522 1 130299967 130301586 ECH
Mal5g4519 5 117300496 117301612 Mal2g0876 2 10142490 10143244 ECH