Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0871 ATGTTCGGACCACCACAACAATGGGAGATGATTTTCGATTTGATGATAAGAGACTCTTCGAACCCTAACCCTAATCCCCCAACTTCGCAACCTTCCTTTCAATCTTTCATTTCGCAGATAATGGGAGAACCAAAGGAGGAAACTTATGAGGAAGAGCTTCTCGATTACGAGGAGGAAGAAGACAAAGCTCCCGACACCAACGGAGCTAAAGTCAACGGTGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTTAGAGATTTTCTCCTCAAACCAGAGCTTCTTCGGGCTATCGTCGATTCCGGATTCGAACATCCATCTGAAGTGCAACATGAGTGCATACCTCAAGCAATCCTCGGAATGGATGTAATTTGTCAAGCCAAATCTGGAATGGGAAAGACTGCTGTCTTTGTTCTCTCGACTTTGCAGCAGATTGATCCTGTTCCAGGTCAAGTTTCTGCTCTTGTTCTGTGCCATACAAGAGAACTAGCTTACCAGATATGCCATGAGTTTGAGAGGTTTAGTACCTACTTACCTGATCTGAAGGTTGCTGTCTTTTATGGTGGGGTCAATATCAAAGTTCACAAGGATCTGTTGAAAAATGAGTGCCCTCAAATTGTTGTTGGAACGCCTGGAAGAATACTAGCATTGGCCAGGGAAAAAAATCTTTCTTTGAAGAATGTTCGTCATTTCGTTTTAGATGAGTGTGATAAGATGCTTGAATCACTGGACATGAGGAAAGACGTTCAAGACATTTTCAAGTTGACTCCCCATGATAAGCAAGTTATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGCCCAGTCTGCAAAAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAAGCCAAGTTAACTCTTCATGGATTGGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAAAACCGCAAGTTGAATGATCTTCTTGATGCACTAGACTTCAACCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAAACTGCTTATAGAGTGCAATTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAGAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCTACAGATTTGGTTGGTAGAGGGATTGACATTGAACGTGTCAATATTGTTATAAACTATGACATGCCTGATTCTGCAGACACTTACTTGCACAGGGTTGGCCGAGCTGGACGATTTGGTACCAAAGGCCTTGCAATTACATTTGTTTCGTGTTCTTCTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTTGAAATAGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACATGCCGTCGTAG 1404 0.4195 MFGPPQQWEMIFDLMIRDSSNPNPNPPTSQPSFQSFISQIMGEPKEETYEEELLDYEEEEDKAPDTNGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILALAREKNLSLKNVRHFVLDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLIECNFPSICIHSGMSQEERLKRYRGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEIDIKQLPEQIDTSTYMPS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0871 467 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 67 462 - -
Mal2g0871 467 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 67 462 - -
Mal2g0871 467 Pfam Helicase conserved C-terminal domain 316 423 IPR001650 -
Mal2g0871 467 SMART helicmild6 342 423 IPR001650 -
Mal2g0871 467 MobiDBLite consensus disorder prediction 47 73 - -
Mal2g0871 467 SMART ultradead3 105 306 IPR014001 -
Mal2g0871 467 MobiDBLite consensus disorder prediction 48 62 - -
Mal2g0871 467 Pfam DEAD/DEAH box helicase 111 276 IPR011545 GO:0003676|GO:0005524
Mal2g0871 467 Gene3D - 299 466 IPR027417 -
Mal2g0871 467 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 114 IPR014014 GO:0003724
Mal2g0871 467 Gene3D - 82 298 IPR027417 -
Mal2g0871 467 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 302 463 IPR001650 -
Mal2g0871 467 CDD SF2_C_DEAD 303 432 - -
Mal2g0871 467 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 290 IPR014001 -
Mal2g0871 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 436 IPR027417 -
Mal2g0871 467 CDD DEADc_DDX39 85 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0871 Mal-Chr2 10070088 10075771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0871 62 467 Eukaryotic Initiation Factors Gene Family AT5G11200 82.774 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0871 K12812 - gmx:100808957 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0871 2 10070088 10075771 Mal2g0871 2 10070088 10075771 ECH
Mal2g0871 2 10070088 10075771 Mal1g5519 1 130256415 130262786 ECH
Mal1g5519 1 130256415 130262786 Mal2g0871 2 10070088 10075771 PCT