Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0819 ATGACCAATTTTCAGAAACCTACCATAAAGGAACCAAAGAAGGATCTGTCTTCCAACGCATCTGCTTCTACTTCTAAGAGGAAATCAAAAGATGCAGATGAAGATGGGAAGAAGAAAAAATACCAGATGCAAAGGGATCCAAATGCACCCAGGAGGGCATTGTCTGGATTCATGTTCTTTTCTCGAAGGGGAAGAGAGAGTCTAAAGAAAATTAATCCTGGGATTTCATTTACGGATGTGTCAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGATGCTGAGCGGAAGAATCCACTTGTACCATCTAAAGGAGAGGAGATATCAAAGTACAAGGAGCTCGATCCATTCGATCGTTTACTACCGCTAAAAGCCCTCTGTGAAGTTAGAGCTGACCAACATGATGTGGTATCATATATTAATGACGCTTTAAAAGAAGGAACCCAGATTTCTTCTTTTCGCAAAGAGGCCTTTGGAAGAGATGGCACATCCTATTGGTACGATGCAAACACAAAAGCCCAGAGTCACAGATTGTACAGGGAAACAATCACATCAGTCTCAACTCCAAACCGTAAGGTCAAAGGATGTTTATCACTTCCCAACTTTCAATGGGAAACACTTGCCTCCAATCTTGACGAATTTTCTGAAGTAGCTGAAAAATTATCATCTAGCAAGTCTCCTGCTGAAGTTTTTATGGGCAACAGGCTTCAAAGTGATGCTATTCCTCTTCTTGAGAAACTTCAAAAGGCCGTTAATTCAGTCTCTGGCCCACCAGGATCTGGCTCCAGTTACTTGTATGGATTTTTTGACCAAGCTTGGAAAGATGGAATGACCAAGGACGAAGCTGAGGATCTTGTCAAAAAGGCAGTTTCACTTGCCATTGCTCGTGATGGTGCTAGTGGCAGAGTTGTCCGAACAGTCATAATAAACTCAGAAGGAGTGACCAGGAATTTATACCCAGGTGATCAACTTCCGATATGGCACGATGAACTGGAGGCTCATAACTCATTGGTAGACATTCTTGGTGCCCCAGAGCCAATGAACATATGA 1050 0.4238 MTNFQKPTIKEPKKDLSSNASASTSKRKSKDADEDGKKKKYQMQRDPNAPRRALSGFMFFSRRGRESLKKINPGISFTDVSRVLGEKWKKMSDAERKNPLVPSKGEEISKYKELDPFDRLLPLKALCEVRADQHDVVSYINDALKEGTQISSFRKEAFGRDGTSYWYDANTKAQSHRLYRETITSVSTPNRKVKGCLSLPNFQWETLASNLDEFSEVAEKLSSSKSPAEVFMGNRLQSDAIPLLEKLQKAVNSVSGPPGSGSSYLYGFFDQAWKDGMTKDEAEDLVKKAVSLAIARDGASGRVVRTVIINSEGVTRNLYPGDQLPIWHDELEAHNSLVDILGAPEPMNI* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0819 349 PANTHER REMODELING AND SPACING FACTOR 1 81 249 IPR028938 GO:0006355|GO:0031213
Mal2g0819 349 Gene3D High mobility group box domain 33 129 IPR036910 -
Mal2g0819 349 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 81 249 - -
Mal2g0819 349 CDD HMGB-UBF_HMG-box 50 97 - -
Mal2g0819 349 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 50 119 IPR009071 -
Mal2g0819 349 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 258 330 IPR029055 -
Mal2g0819 349 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 259 332 IPR029055 -
Mal2g0819 349 MobiDBLite consensus disorder prediction 26 46 - -
Mal2g0819 349 SMART hmgende2 49 120 IPR009071 -
Mal2g0819 349 MobiDBLite consensus disorder prediction 1 53 - -
Mal2g0819 349 Pfam Proteasome subunit 259 309 IPR001353 GO:0005839|GO:0051603
Mal2g0819 349 SUPERFAMILY HMG-box 37 97 IPR036910 -
Mal2g0819 349 Pfam HMG (high mobility group) box 50 97 IPR009071 -
Mal2g0819 349 PRINTS Proteasome component signature 270 281 IPR000243 GO:0004298|GO:0005839|GO:0051603
Mal2g0819 349 PRINTS Proteasome component signature 259 270 IPR000243 GO:0004298|GO:0005839|GO:0051603
Mal2g0819 349 PRINTS Proteasome component signature 295 306 IPR000243 GO:0004298|GO:0005839|GO:0051603
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0819 Mal-Chr2 9520707 9528547 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mal2g0819 Proteasome 1.3e-07 CL0052
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0819 - - lja:Lj1g3v1943860.2 234.572