Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0686 ATGTTTAATAGTAATACCAACCATTTTGTAATAGTAATTATGGTTCTTTCACTAGTCTTAAACACTCAAGGCCAAGAAAACAGAGAAAAACAGAACATGGCAGAGTTACCAAAAGGTGTGACTCCAAGTAAAGGTGTTGTAATAATAGTACTTTCCATAATGTTTTTCATAACTTTTATTTTACTTGTATATGTCAAATTCTGTCGTGTTACTCCTCTTCATCTTCTAAACCCAAACCCTCTTAATCTTCAAAACAATCAAGGACAAACTCGATCAAGGTCTATAAATTCTGGTGTTGAAAAAAAAGTAATTGAAACACTTCCTTTCTTCAAATTCTCTTCTTTAAAAGGATCCAAACAAGGCTTAGAATGTAGCATTTGTTTGTCGAAATTTGAAGACGAAGAGATTCTAAGACTGTTGCCGAAATGCAAGCACGCTTTTCACATGACTTGTATTGACAAGTGGCTTGAAAGTCACTCTACTTGTCCTCTTTGCAGGTACATGGTTGAAGAAAGTGACATCAGAAACTTCACTTTTTCATTCAGCTCAAGATTCTTAAGAGTCCCTTCAAATTTAAGTGAAGATCCAAATCTTGAAATCTTTATTCAGAGACAACCATCGCAAAGAAAGAACAAAAAAGAAGAACAAGAAGTGGTTCTTCTTGATCATGAAGAAGATGGTGGTAGCAATAATGTTACAAAGTGGAAACAACAACAACCATTGCATTTGATTAATCATAAGATATTAATCTCTGATGTTGTTACAAGGAGTAGGTGGAGTGATCTTAACTCTTCAGATTTGTTATCACTGAACAGTGAAATGCTTCATGATATGTCAAGTACGAGATTCTCTCCTGAATTTCATGGAATTTCAAGTGTTCATTCTGATGAAGAAGAAAATTCGTTTACGGCATTGAATCCTGGTGAAAAGAGGTGTATGTCTGAGATTGCAAATGTTTCAAGGCTTTTGGAAATGAACAGAAGAAGCAATGGTGGGGACAATGGAAGTGATGAGAAGTTGTGGAGGGATTGGATGCCAATTGCAAGGAGAACAGTTCAATGGTTTGCAAGACAAGAAACAAACTCAGTTCAATTACAACATAAACATTTAGCTTCATACGTTTGA 1125 0.3502 MFNSNTNHFVIVIMVLSLVLNTQGQENREKQNMAELPKGVTPSKGVVIIVLSIMFFITFILLVYVKFCRVTPLHLLNPNPLNLQNNQGQTRSRSINSGVEKKVIETLPFFKFSSLKGSKQGLECSICLSKFEDEEILRLLPKCKHAFHMTCIDKWLESHSTCPLCRYMVEESDIRNFTFSFSSRFLRVPSNLSEDPNLEIFIQRQPSQRKNKKEEQEVVLLDHEEDGGSNNVTKWKQQQPLHLINHKILISDVVTRSRWSDLNSSDLLSLNSEMLHDMSSTRFSPEFHGISSVHSDEEENSFTALNPGEKRCMSEIANVSRLLEMNRRSNGGDNGSDEKLWRDWMPIARRTVQWFARQETNSVQLQHKHLASYV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0686 374 CDD RING-H2_EL5_like 123 166 - -
Mal2g0686 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 292 369 - -
Mal2g0686 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 285 - -
Mal2g0686 374 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Mal2g0686 374 SMART ring_2 124 165 IPR001841 -
Mal2g0686 374 PANTHER RING-H2 FINGER PROTEIN ATL4J 292 369 - -
Mal2g0686 374 PANTHER RING-H2 FINGER PROTEIN ATL4J 17 285 - -
Mal2g0686 374 Pfam Ring finger domain 123 166 IPR001841 -
Mal2g0686 374 SUPERFAMILY RING/U-box 105 171 - -
Mal2g0686 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 175 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0686 Mal-Chr2 8048352 8049476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0686 42 370 C3H Transcription Factor Family AT2G20030 39.444 8.90e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0686 K10664 - gmx:100816668 400.593