Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0579 ATGACGGAACCTCAGAAAAATCGTTCACCAATGCCACTTTCGTCAAAACCACCACCGTCAAAAAAGAAGCGAAACCTCCCTGGAATGCCAGATCCAGATGCTGAAGTAATCGCTTTATCACCAAACACTTTGTTAGCAACGAACCGTTTCATATGCGAGATCTGCAGCAAAGGATTCCAACGGGAACAGAATCTTCAACTTCACCGGCGAGGACATAACATGCCATGGAAGCTCCGGCAGCAAGAGACGTCGGAGAAGAAAATCCGGAAGAAAGTGTACGTTTGTCCCGAGCCATCCTGCGTCCACCACAATCCGTCAAGAGCGCTAGGTGACCTCACCGGCGTGAAAAAGCACTTTTACAGAAAGCACGGTGAGAAGAAGTGGAAATGTGAACGTTGTTCTAAAAAATACGCTGCGGAATGTGATTGGAAAGCACATATTAAGAGCTGTGGAACTAGAGAGTATAAATGTGATTGTGGCACATTGTTTTCTAGGAAGGACAGTTTTGTTACGCACAGAGCGTTCTGCGATGTAGTGGGGGGTGATGAGAGTGGGAGGGGAGGTAGTACTAGTAATGTTGTTGCTTCTTCTTCACCGGTTACGCCACCACTAACTCCATCAACGACATCTGTGGTGGTGGTGGTGTCTCCTACTTTGTCCTCTACTCAGTGCTCAGATATTGCAGAAAACCCAACAAGTCTGTCACCGCCATCTTCAAACGCTTCTACTTCTACTTCTACTAGTTGTTGTTCTTCATTCAGCAGTCTCATGTCAAGCTTGGCTCACTCAGATTCCCCAGCAACTTTATCTATCACGGAACCCACAACCCTCTCACTTTTCACACCACTCTATCTCTCCAACAACAACAATGAGAGCCCTCTTCCCCACTACAGTCCTGCATTATCTGCCACTGCATTACTCCAAAAAGCTGCTCAAGTGGGTTCATCTTCATCCAATGCATCCTTGCTTCGTGCTCTAGGCTTGAAAGAAAACAGTGTCAGTATTAGCAGCACCGCAGCAGATCAATGGAATGGCCATCATCATGTTAAACAAGATAATGAGCTTGTGGCAGATTACCTTGGGCTTGGACTTCCATGTGGGAATGATATGATGGGCTCATCGTGCCAGCCCATGACCCGTGATCTTCTTGGTCTAAGCATGGGATTAGGTAGAGGGGATGATGATGATGATGATCTTTCTGCTTTACTCACATCTTTTGAAGGGAACTTGGATCCATCTCCATAG 1245 0.4651 MTEPQKNRSPMPLSSKPPPSKKKRNLPGMPDPDAEVIALSPNTLLATNRFICEICSKGFQREQNLQLHRRGHNMPWKLRQQETSEKKIRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFYRKHGEKKWKCERCSKKYAAECDWKAHIKSCGTREYKCDCGTLFSRKDSFVTHRAFCDVVGGDESGRGGSTSNVVASSSPVTPPLTPSTTSVVVVVSPTLSSTQCSDIAENPTSLSPPSSNASTSTSTSCCSSFSSLMSSLAHSDSPATLSITEPTTLSLFTPLYLSNNNNESPLPHYSPALSATALLQKAAQVGSSSSNASLLRALGLKENSVSISSTAADQWNGHHHVKQDNELVADYLGLGLPCGNDMMGSSCQPMTRDLLGLSMGLGRGDDDDDDLSALLTSFEGNLDPSP* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0579 414 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Mal2g0579 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 72 IPR013087 -
Mal2g0579 414 SUPERFAMILY beta-beta-alpha zinc fingers 49 148 IPR036236 -
Mal2g0579 414 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 290 411 - -
Mal2g0579 414 MobiDBLite consensus disorder prediction 183 202 - -
Mal2g0579 414 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 17 283 - -
Mal2g0579 414 Gene3D Classic Zinc Finger 46 73 - -
Mal2g0579 414 MobiDBLite consensus disorder prediction 185 202 - -
Mal2g0579 414 MobiDBLite consensus disorder prediction 1 32 - -
Mal2g0579 414 Pfam Zinc-finger double-stranded RNA-binding 50 72 IPR022755 -
Mal2g0579 414 SMART c2h2final6 93 123 IPR013087 -
Mal2g0579 414 SMART c2h2final6 128 148 IPR013087 -
Mal2g0579 414 SMART c2h2final6 50 72 IPR013087 -
Mal2g0579 414 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 283 - -
Mal2g0579 414 Gene3D Classic Zinc Finger 86 176 - -
Mal2g0579 414 MobiDBLite consensus disorder prediction 394 414 - -
Mal2g0579 414 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 290 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0579 Mal-Chr2 6664266 6668214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0579 21 405 IDZ Gene Family AT5G66730 47.277 7.21e-116 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal2g0579 zf-C2H2_jaz 7.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0579 K25869 - gmx:100818095 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0579 2 6664266 6668214 Mal2g0579 2 6664266 6668214 ECH