LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g0515	ATGGCTCGAGGAAAGATCCAGATCAAGAGGATTGAGAACACAACCAACCGACAAGTAACTTACTCAAAACGAAGGAATGGTCTTTTCAAGAAGGCTAACGAGCTCACTGTTCTTTGTGATGCTAAGGTTTCTATTGTCATGTTCTCCAGCACTGGCAAGCTTCATGAGTACATTAGCCCCTCCACCTCAACTAAGCAGTTTTTCGATCAGTATCAGATGACTGTTGGAATTGATCTGTGGAACTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGATGTCAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGTCTGAACGATCTGAGCATGGAAGATCTGAGGCTACTTGAGGATGAAATGGACAAGGCGTCCAAGGCTATTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAATGAGAGAGAGGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCTGAAGATCCACGTTTTGAAATGATGGACAATGGAGGAGAGTATGAGTCTGTGATTGGATTCTCAAATTTAGGTCCCCGCATGTTTGCATTGAGCTTACAGCCTACTCATCCTAATCCTAACCCTCATAATGGACCACCAGCTGCTGCCTCGGATCTCACCACTTACCCTTTACTTTTTTAG	696	0.4339	MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIVMFSSTGKLHEYISPSTSTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGDCLNDLSMEDLRLLEDEMDKASKAIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRFEMMDNGGEYESVIGFSNLGPRMFALSLQPTHPNPNPHNGPPAAASDLTTYPLLF*	232

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g0515	231	ProSiteProfiles	K-box domain profile.	84	174	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mal2g0515	231	Coils	Coil	77	107	-	-
	Mal2g0515	231	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Mal2g0515	231	Coils	Coil	114	134	-	-
	Mal2g0515	231	MobiDBLite	consensus disorder prediction	204	224	-	-
	Mal2g0515	231	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Mal2g0515	231	Coils	Coil	151	171	-	-
	Mal2g0515	231	CDD	MADS_MEF2_like	2	80	IPR033896	GO:0000977\|GO:0045944
	Mal2g0515	231	SUPERFAMILY	SRF-like	3	95	IPR036879	GO:0003677\|GO:0046983
	Mal2g0515	231	Gene3D	-	13	83	IPR036879	GO:0003677\|GO:0046983
	Mal2g0515	231	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	228	-	-
	Mal2g0515	231	PANTHER	APETALA3	1	228	-	-
	Mal2g0515	231	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Mal2g0515	231	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mal2g0515	231	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mal2g0515	231	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mal2g0515	231	Pfam	K-box region	82	167	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mal2g0515	231	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g0515	Mal-Chr2	6042904	6047176	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal2g0515	1	230	MADS-box Gene Family	AT3G54340	55.844	4.20e-95	276

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Mal2g0515		K-box	3.6e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g0515	K09264		-	gmx:547720	411.379

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal2g0515	2	6042904	6047176	Mal2g0515	2	6042904	6047176	ECH