Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0486 ATGTCGACTCCAAGCGAGGATCAAATTCAACCCTCTCCTCCTCCTCATCATCATCATCATTTTTCTCAATTCAATCTCAATCTATTACATTCACCACCTCCCAACTCTTCTCCTCCTTTTACTTCTACTACTACTATGCTTCCCTTGAGTCAAAGAAAGGAAATCAATAATGTCAACTTGCACACTAGTAGTAACGTTGAAGCGTTTCCGAGTCAAAGCAACACAGTTAATCTTCCTCCGCTTCTTCAAACCGAATCCAACCAAAGAGGAAAGCATAATGGTAAATCAAAAGTTTCAAGAAATGCAAAATCTGCAAATCAGATTTCAAATACAGACTCTCTGAATTCAGCCACAGTCAACTGTCGTTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTGTCAGCTTGATCCATGAGGCTAAGGATGGTACCCTTGATCTAAATAAAACTGCTGAGGTCTTAAAGGTTCAAAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGATGTGATGGACTTGAGCCACGAGAACTGGAGAATCAAGTTAATACTCTAAAGGCTGAAGTTGAAAGTTTATATGCCGAGGAATGCAAACTTGACGAGTGTATAAGCGAAAGGAAGGAGCTTATAAGAAACCTGGAGGAAGGTGAAAACACCGGAAAGTACCTTTTTTTTACCAAGGAAGATATTCTTAACCTTCCATGCTTCCAGAATAAGCAACTTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCCGATCCTGATGAGGAATTAGGCTTCCACCAAAGGCAGTACAGAATGATTGTTAGAAGTGCAACTGGACCGATAAATCTGTACCTCTTGAACAAGCACGACCACAAGTGTGAGGGTGTCAGTGCCGAGCAGGCAAAGTTAGAAGATCCATCACAGAGTAGCAACCGCTGCAGAATGGAGGGTGTGGAATTATTAGAAAACCAAGGTTTTCAGAAAAAACCTTCTGGGAGTTTGAGTTCGCTTGACTCAGAGACTTTTGGAATTCAACGAATTACCCCTACAGATTTGGATGTTGATGGTGATTATTGGTTTCAATCAGATCCCCAAGTTGGCCTAACAAAATTGTGGGGGACAAGTGCAGTTGGCTCAGATAGATGA 1194 0.4062 MSTPSEDQIQPSPPPHHHHHFSQFNLNLLHSPPPNSSPPFTSTTTMLPLSQRKEINNVNLHTSSNVEAFPSQSNTVNLPPLLQTESNQRGKHNGKSKVSRNAKSANQISNTDSLNSATVNCRYDSSLGLLTKKFVSLIHEAKDGTLDLNKTAEVLKVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGLEPRELENQVNTLKAEVESLYAEECKLDECISERKELIRNLEEGENTGKYLFFTKEDILNLPCFQNKQLIAIKAPKASFIEVPDPDEELGFHQRQYRMIVRSATGPINLYLLNKHDHKCEGVSAEQAKLEDPSQSSNRCRMEGVELLENQGFQKKPSGSLSSLDSETFGIQRITPTDLDVDGDYWFQSDPQVGLTKLWGTSAVGSDR* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0486 397 SMART E2F_TDP_2 122 187 IPR003316 GO:0005667|GO:0006355
Mal2g0486 397 Pfam E2F transcription factor CC-MB domain 203 302 IPR032198 GO:0046983
Mal2g0486 397 MobiDBLite consensus disorder prediction 64 107 - -
Mal2g0486 397 PANTHER TRANSCRIPTION FACTOR E2F 33 390 IPR015633 GO:0000978|GO:0006357
Mal2g0486 397 Gene3D - 117 189 IPR036388 -
Mal2g0486 397 SUPERFAMILY "Winged helix" DNA-binding domain 122 185 IPR036390 -
Mal2g0486 397 Gene3D - 194 305 - -
Mal2g0486 397 Pfam E2F/DP family winged-helix DNA-binding domain 124 187 IPR003316 GO:0005667|GO:0006355
Mal2g0486 397 CDD E2F_DD 198 305 IPR032198 GO:0046983
Mal2g0486 397 PANTHER TRANSCRIPTION FACTOR E2FC 33 390 - -
Mal2g0486 397 MobiDBLite consensus disorder prediction 1 21 - -
Mal2g0486 397 SUPERFAMILY E2F-DP heterodimerization region 199 304 IPR037241 -
Mal2g0486 397 Coils Coil 217 237 - -
Mal2g0486 397 MobiDBLite consensus disorder prediction 64 89 - -
Mal2g0486 397 MobiDBLite consensus disorder prediction 26 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0486 Mal-Chr2 5595240 5599237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0486 91 388 E2F-DP Transcription Factor Family AT1G47870 52.843 1.61e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mal2g0486 E2F_CC-MB 2.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0486 K06620 - gmx:100811650 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0486 2 5595240 5599237 Mal2g0486 2 5595240 5599237 ECH