Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0454 ATGCTTGATTCAGTTCTTTTGGCACTTTTTCTTCCTTGTCTAGGAATGAGTGCCATCTTCGTTGTCTACATGTGCCTTCTGTACGCCACCACTCGTAACCGTCCAGATTTAAATTCATCGTTGAAACCGGTCACTGAAAAGGGTCTCTCCCCTTTAGATCTTGAAAAGATTCCCAAAATCACCGGTAAAGAATTGGTTGCGTCCACTGAATGCGCCGTTTGTCTCGACGATATTGTTGATGAACAACCGGCTCGTCTGGTTCCCGGTTGCAATCATGCATTTCATCTCCAATGCGCTGACACGTGGCTCTCCAAACACCCTATGTGTCCTCTCTGTAGAGCCAAACTCGACCCTCAGATCCTCAATTCTGAGAGTCCCTGCTGA 384 0.4714 MLDSVLLALFLPCLGMSAIFVVYMCLLYATTRNRPDLNSSLKPVTEKGLSPLDLEKIPKITGKELVASTECAVCLDDIVDEQPARLVPGCNHAFHLQCADTWLSKHPMCPLCRAKLDPQILNSESPC* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0454 127 SUPERFAMILY RING/U-box 70 119 - -
Mal2g0454 127 Pfam Ring finger domain 70 113 IPR001841 -
Mal2g0454 127 SMART ring_2 71 112 IPR001841 -
Mal2g0454 127 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 124 - -
Mal2g0454 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 124 - -
Mal2g0454 127 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Mal2g0454 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 119 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0454 Mal-Chr2 5170218 5170601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0454 1 127 C3H Transcription Factor Family AT5G42200 55.147 2.11e-47 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0454 K19037 - gmx:100811160 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0454 2 5170218 5170601 Mal2g0454 2 5170218 5170601 ECH
Mal1g6135 1 140331112 140331510 Mal2g0454 2 5170218 5170601 PCT