Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0426 ATGGCACGAATCAAACTCGTAAGAAGATCCATCGGAACTTTGCCAAAACTTATTCTTCGAACTAATTTCCCATCGTCGAATCTGCAGCTTCCTGGTCCTTGTTACCCCTCCATTGATGGTGTTTGCATGGTTTGCAAACAAATGTTGTATGTTGGAGCTATTGAAACTGTTTATTGCCAAACATGCCAAACTCAATGGCATCTTCCATGTTTTCCTTCGACGATCGATTGGGAATGCCCTAATTGTTTGTATGATAATTCTCTTACTGATGATGATGAAGAAGAAGAAATCGTTGGAGGATCTCCTAAACCAGCTACTGAAACCAACAACGAACACAACAATGATGTGCTTGATAGATATTGTTCCTTCTGCATGGAGTTGCCTGAGAGACCCGTCACTACTCCATGTGGACACAATTTTTGCTTAGAGTGTTTTGAGAAATGGATGAAGCAACAAAAACAAACTTGCCCAAATTGTAGGACTATAATTCCTCCAAAGGTGGCAAGTACTCCACGTATCAACACACAATTGGTGATCGCCATTCGTATGGCTAAGCTAGCTAGATTGGAGGGTGTTGGAGGAACCACTGCTCCAAAAGTTTATCATATAGTTCACAAGGATAAGCGACCTGACATTGCTTTTATGATGGAAAAAGCTGTGAAATCAAGAAAAGTTAATGCTGATAGTGGGAAAATATTTGTGACCATTGCAAAAGATCATTTTGGACCTATTGTAGCTGAGAATGATCCTACTAGGAACCGTGGGGTTCTTGTTGGCGATATGTGGGAGGATAGGATGGAATGCAGGAAATGGGGTGCTCATTTTCCCACTGTTGCGAGGATTGCAGGTCAGAGAAATCACGGTGCTCAATCAATTGTTTTGTCTGGTGGTTACATTCATGATGAAGATCATGGTGACTGGTTCACTTACACGGGAAGTGGTGGCAAAAATGAGTTCGTGGATCAACAATTTAATAATATAAATGAGGCCTTAAGACTCAGTTGCCTAAAAGGATATCCTGTTCGTGTCATTAGGTCCCACAAGGAGAAAAACTCCTCTTATGCACCGGAAGCAGGTGTGAGATACGATGGGGTTTATAGAATCGAGATATGTTGGTGCAAAATTGGAAAAAATGGTCAAAAGGTTTGCAGGTATTTGTTTATGAGGTGTGACAACGAACCAGCGCCATGGACAAGTGATTCATCAGGAGACTGTCCCCGTCCACTACCTTTTATCGAGGAGTTTAGGGATGCAGTTGATTTTATTAGAAGGAAGGGTAATCCATCATGGGACTTTGATGAGGAAAAAGGTTGTTGGTTTTGGAAGAAGCCTCCACCATTAAGTAAGAGGCCACTAAACATTGTGGATCCTATATATGGAACAAAAACAAAAGTTGTTAAGTCAAAAGCAAAAAATGTGTCCTTCAAAATCAAGGATAGACTATTAAAAGACTTTGGTTGTAATATTTGTCGCAAGGTGTTGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCTTGCCTTGAGGGTGGGTTTTCTGGACAAAATTCTCAAAGTGGGCACAATTTGCAGCCGCAGAAGAACATTATGAAATGTCCTACTTGTTTAACTGACATAACAAATTATCTTCAGAATCCCCAGGTTAATAGAGAAATGATGAGTGCCATAGAATCACTCCAGCTACAAACTGAACAGATGAAGGAGAGTTATGAAGAATCAAGTGGTAGAAATCTCAAGCTGGGTGAGAAGACAAAGGTTGCAAAACTCTGTGGTTCAAGTGAGAAAGTCTTGAAAAATGTTATCGAGAATGATCTGAATCCTCAACGGAAGCGAAGGAAAGGTGCTGGTGGCAAGGCTGTCATGAACGTGGAGGAAAATTATTGA 1893 0.4105 MARIKLVRRSIGTLPKLILRTNFPSSNLQLPGPCYPSIDGVCMVCKQMLYVGAIETVYCQTCQTQWHLPCFPSTIDWECPNCLYDNSLTDDDEEEEIVGGSPKPATETNNEHNNDVLDRYCSFCMELPERPVTTPCGHNFCLECFEKWMKQQKQTCPNCRTIIPPKVASTPRINTQLVIAIRMAKLARLEGVGGTTAPKVYHIVHKDKRPDIAFMMEKAVKSRKVNADSGKIFVTIAKDHFGPIVAENDPTRNRGVLVGDMWEDRMECRKWGAHFPTVARIAGQRNHGAQSIVLSGGYIHDEDHGDWFTYTGSGGKNEFVDQQFNNINEALRLSCLKGYPVRVIRSHKEKNSSYAPEAGVRYDGVYRIEICWCKIGKNGQKVCRYLFMRCDNEPAPWTSDSSGDCPRPLPFIEEFRDAVDFIRRKGNPSWDFDEEKGCWFWKKPPPLSKRPLNIVDPIYGTKTKVVKSKAKNVSFKIKDRLLKDFGCNICRKVLASPLTTPCAHNFCKACLEGGFSGQNSQSGHNLQPQKNIMKCPTCLTDITNYLQNPQVNREMMSAIESLQLQTEQMKESYEESSGRNLKLGEKTKVAKLCGSSEKVLKNVIENDLNPQRKRRKGAGGKAVMNVEENY* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0426 630 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 38 87 IPR045134 -
Mal2g0426 630 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 112 591 IPR045134 -
Mal2g0426 630 SUPERFAMILY RING/U-box 477 551 - -
Mal2g0426 630 ProSitePatterns Zinc finger RING-type signature. 502 511 IPR017907 -
Mal2g0426 630 MobiDBLite consensus disorder prediction 610 630 - -
Mal2g0426 630 Gene3D - 224 406 IPR036987 -
Mal2g0426 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 591 IPR013083 -
Mal2g0426 630 Pfam RING-type zinc-finger 487 536 IPR027370 -
Mal2g0426 630 ProSiteProfiles Zinc finger RING-type profile. 121 160 IPR001841 -
Mal2g0426 630 SUPERFAMILY PUA domain-like 230 409 IPR015947 -
Mal2g0426 630 ProSiteProfiles YDG domain profile. 251 389 IPR003105 -
Mal2g0426 630 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 38 87 - -
Mal2g0426 630 SMART G9a_1 246 393 IPR003105 -
Mal2g0426 630 SUPERFAMILY FYVE/PHD zinc finger 39 83 IPR011011 -
Mal2g0426 630 Pfam SAD/SRA domain 254 392 IPR003105 -
Mal2g0426 630 SMART ring_2 42 82 IPR001841 -
Mal2g0426 630 SMART ring_2 121 159 IPR001841 -
Mal2g0426 630 SMART ring_2 487 538 IPR001841 -
Mal2g0426 630 SUPERFAMILY RING/U-box 120 169 - -
Mal2g0426 630 Pfam Zinc finger, C3HC4 type (RING finger) 118 163 - -
Mal2g0426 630 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 112 591 - -
Mal2g0426 630 ProSiteProfiles Zinc finger RING-type profile. 487 538 IPR001841 -
Mal2g0426 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 188 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0426 Mal-Chr2 4708493 4723522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0426 39 572 C2H2 Transcription Factor Family AT5G39550 51.531 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0426 K10638 - gmx:100781044 713.761