Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0340 ATGGCATACCAGGGTCCAAGTTCAGGATCGAGTTCCAGTTCTGGGTTTCAATTGTTGAATTCTCCTTTTGGAGATACTACTCATACTAAGGTTTTCGTTGGAGGATTGGCATGGGAGACTCAGAGTGAAACTATGCGCCGTTACTTCGAGCAGTTTGGGGATATTCTCGAAGCAGTCGTCATCACTGATAAGAATACCGGACGATCCAAAGGCTACGGTTTTGTGACATTCCGTGATCCAGAAGCTGCTAGGAGAGCATGTGTTGATCCAAGTCCTGTTATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCGCTTGGTCGTCCACGACCCCCTATCCCCTATGGACGGGTAAGACCAGCATCCCCTTATGTTGGAAGTTTGCAACCAGTCCGTGGTGCTTACGTTGGAGGTTATGGCTACCAGCAACCGCTTTCCTATGGCTATCAACAAGGAATGGTTTATCCTCCTTATGGGTATACGGCATATGGACCTGAATACGTCTACCCACAGGGTATGTACAACCCTTATGCAGGTCAACAACAGTACCTTCAGATATATGGCGTGCCTGGTGCGATGAATACAACTGTTTATCCTTATGGACAATTGGGTCAAGCTATTCCTGGTGGTCATGGTTATACAACAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGTGGGTCCAATGTCAATGCAATAACAACTTCACCCGTGCCTGCCATTCAAGTCCCATATCCTAGCGGAATTGCTCCACCAGTTCCAGGCCAACCACAATTTATTGTTTCTCCCCAGTTCATGCAAGGAAGCGGTCCTGACCAAACAGATGGTTGA 843 0.4721 MAYQGPSSGSSSSSGFQLLNSPFGDTTHTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPSPVIDGRRANCNLASLGRPRPPIPYGRVRPASPYVGSLQPVRGAYVGGYGYQQPLSYGYQQGMVYPPYGYTAYGPEYVYPQGMYNPYAGQQQYLQIYGVPGAMNTTVYPYGQLGQAIPGGHGYTTMQGYTVPGHQIVPYGGSNVNAITTSPVPAIQVPYPSGIAPPVPGQPQFIVSPQFMQGSGPDQTDG* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0340 280 SMART rrm1_1 30 102 IPR000504 GO:0003723
Mal2g0340 280 CDD RRM_RBM24_RBM38_like 29 104 - -
Mal2g0340 280 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 4 276 - -
Mal2g0340 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 106 IPR000504 GO:0003723
Mal2g0340 280 Gene3D - 4 116 IPR012677 -
Mal2g0340 280 PANTHER BOULE-RELATED 4 276 IPR037366 GO:0003729
Mal2g0340 280 SUPERFAMILY RNA-binding domain, RBD 28 142 IPR035979 GO:0003676
Mal2g0340 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0340 Mal-Chr2 3799559 3802639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0340 1 105 C2H2 Transcription Factor Family AT2G19380 39.048 4.03e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0340 - - aprc:113864528 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0340 2 3799559 3802639 Mal2g0340 2 3799559 3802639 ECH