Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0315 ATGCAGGAACTTGCAAGAATGCATGCCATATTGCAAAAGGAGATTGAAGCTTCTGAATCATCAATCACCGAGTCAGAATCGTCTATCACTACAGAAGCAAAGGAAATTGACAACGACGATCTTGTGATGCATCTTGGTGTTGACAATGTACAAGAACCAAACCCTCATCATGATTCTGATTTTGATTCCTTCAAAGTTATGACTGAGGAATCAATAATCCATTCTTCCAATTTCTTGTGCCCACCGCCATTTTCAAACTTCACTTCTTCTCACATGTCTCCTAGTTTTGTGTTCTTATCGCCATCCACGACCACTCAAATATTTGGGCATTCTTCAATTAAGTATACAAAATTGGTTCAAAGTATTATTGAATTATCATTAATTGTCCAAATTGATCAACGACCTGAGCAATTAGTGACACCGCATTTATGGGATACAACGCCATATGATCCTGTATTTCACCGGCAGTTAGACGTACAGATCGACGGTCCACATGAGTCCAATTTGAACCCTGGTTTAGATCAAGCGGCGTATAAGACCCACAAACTTGTAGAGGGTTTCTTCCTCTCCCCAATTTCCATGGCGGAAGTTGAATACCGATGCTTTGTTGGTGGACTAGCCTGGGCCACCGACAATGAAGCTCTCGAGAAAGCGTTTTCTTCTTTTGGTGAAATCGTCGAATCGAAGGTTATCACTGATCGTGAAACTGGAAGATCGAGAGGATTTGGATTTGTCACATTCGCAACGGAGCAGGCGATGAAAGATGCAATTGAAGGGATGAACGGACAGGATCTCGATGGACGTAACATCACTGTGAACGAGGCTCAAAACCGCGGCAGTGGCGGAGGCGGTGGAGGTCGTGGCGGTGGTGGATACAGTGGAGGCGGTGGATATGGTGGTGGCGGTGGAGGTTATAACCGTGGTGGAGGAGGTGGAGGTTATGGAGGTGGTGGCCGTCGTGATGGTGGCGGTGGAGGGTATGGTGGAGGTGGTTATGGAGATGGTGGTTCCCGGTACTCCAGGGGAGGTGGTGGTGGTGGCTCTGACGGTGGAAACTGGAGGAATTAA 1068 0.4663 MQELARMHAILQKEIEASESSITESESSITTEAKEIDNDDLVMHLGVDNVQEPNPHHDSDFDSFKVMTEESIIHSSNFLCPPPFSNFTSSHMSPSFVFLSPSTTTQIFGHSSIKYTKLVQSIIELSLIVQIDQRPEQLVTPHLWDTTPYDPVFHRQLDVQIDGPHESNLNPGLDQAAYKTHKLVEGFFLSPISMAEVEYRCFVGGLAWATDNEALEKAFSSFGEIVESKVITDRETGRSRGFGFVTFATEQAMKDAIEGMNGQDLDGRNITVNEAQNRGSGGGGGGRGGGGYSGGGGYGGGGGGYNRGGGGGGYGGGGRRDGGGGGYGGGGYGDGGSRYSRGGGGGGSDGGNWRN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0315 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 270 IPR000504 GO:0003723
Mal2g0315 355 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 194 355 - -
Mal2g0315 355 Gene3D - 164 294 IPR012677 -
Mal2g0315 355 MobiDBLite consensus disorder prediction 313 355 - -
Mal2g0315 355 SUPERFAMILY RNA-binding domain, RBD 199 311 IPR035979 GO:0003676
Mal2g0315 355 Coils Coil 1 21 - -
Mal2g0315 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723
Mal2g0315 355 CDD RRM1_gar2 200 275 IPR034272 -
Mal2g0315 355 PANTHER GEO13361P1-RELATED 194 355 - -
Mal2g0315 355 SMART rrm1_1 200 273 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0315 Mal-Chr2 3537424 3540476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0315 201 278 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 3.08e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0315 - K13195 ccaj:109800369 159.844