Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0285 ATGGCTAAACCAAAAGCTCCAAAGCGAACCCTAGAGTCTTACTCAGTCAAACACATGAACAAACCTATCAAAGCTGGGGATTGTGTGCTTATGCGTCCATCTGAACCGTCGAAACCCTCGTACGTGGCTAGGATTGAAGGGATCGAAGCTGATTCACGAGGTGCTAATGTGAAAATTCATGTCCGTTGGTATTACCGGCCGGAGGAGTCAATCGGTGGCCGGAGACAGTTTCACGGCTCGAAGGAGCTTTTTCTCTCCGATCATTTCGATGTTCAGAGTGCTGATACGATTGAAGCAAAGTGTGTTGTTCACAGTTTCAAGAGCTACACCAAGCTTGATGCTGTTGGTAATGATGATTTCTTCTGTCGATTTGAGTACAATTCCGCTACTGGTGCTTTCAATCCTGATAGAGTTGCTGTGTTTTGTAAATGTGAGATGCCCTACAACCCTGATGATCTTATGGTCCAATGCGAGGGCTGCACTGACTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCGAAAGACTTGACCACTTCTTTTGTGAAAGTTGTTCTGTCGAAGGTCAAAAAGAGTTGCAAAATTCTCATTCTGCTACAAGACTTGCAGATACCAAGGTGGATACTAAACGCCGTCGGAGGTAA 651 0.4547 MAKPKAPKRTLESYSVKHMNKPIKAGDCVLMRPSEPSKPSYVARIEGIEADSRGANVKIHVRWYYRPEESIGGRRQFHGSKELFLSDHFDVQSADTIEAKCVVHSFKSYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVFCKCEMPYNPDDLMVQCEGCTDWFHPACIDMTVEEAERLDHFFCESCSVEGQKELQNSHSATRLADTKVDTKRRRR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0285 216 Pfam PHD-finger 141 189 IPR019787 -
Mal2g0285 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Mal2g0285 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Mal2g0285 216 Pfam BAH domain 24 136 IPR001025 GO:0003682
Mal2g0285 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 204 IPR013083 -
Mal2g0285 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Mal2g0285 216 Gene3D - 1 133 IPR043151 -
Mal2g0285 216 PANTHER OS08G0421900 PROTEIN 1 216 - -
Mal2g0285 216 SUPERFAMILY FYVE/PHD zinc finger 131 191 IPR011011 -
Mal2g0285 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Mal2g0285 216 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
Mal2g0285 216 SMART PHD_3 141 188 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0285 Mal-Chr2 3297300 3301167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0285 41 139 Core DNA Replication Machinery Family AT4G14700 32.323 1.20e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal2g0285 BAH 6.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0285 - - gmx:100787968 426.787