Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0260 ATGGAGGATTGTAAACAGAGTACGTTAGTGATTGATCAAACCACCGAGCAACTCATAGCCAGGTGCATAGCTCCTGTCAAAAAGGATTTCCTTCGTCCTCCTCCCGATCGAACAATTACTTCTTCCACTCAAAACGACAACAAACCCCCTGTTCTCGCCAAAGAGAAAAAGTCTAAACGCCAACTCAAACGCGAACGCCTTCAGGATCAAAAATCAACAAAAAACCTCTGTCCAGAAATTTCCAAGTCAGGTGATGTTAATTCCTGTCGTTATCAAGACAAATGCCGTTTCAGCCATGATATTGAAGCCTTCAAGGAACAGAAATTACCTGATTTGGAGGGTGAATGCCCTTTCTTGAAATTTGAAGGGTCTTGCCCTTATGGGGTATCTTGTAGATTTTTAAGTACTCATGAAGAGGGAAAGTCTTTATCTTCTAATGGATTGAAGGAAAGGTTAGAAGTTAATGGTTTTAGCAAACATGTTCAAAAGCTTTTGTGGAAAAATAAGATGACTTTTCCCAAAGCTGATGCTAAACTCAAAACTCTCGGTCTCTTGAATAAGTCAAAAGGGAATGATGTTGAAAACAAAGATGGTGGTGAAAAACGTGTTCAATCTGATGACAATGGTTCTTGTGCGGTTACATCTGAGTTGGAAAACAATGACGGTGGTGACAAATGCCGTCAGTCTGATGATGATGGCTCTTGTGGGGTTACCGCTGACTCAGATTCTAAGTTAGAAATCTCTGCAGAAGTTATAAAAGATGATGATGGCATTAATAGAGAACTTGAATCTGGTACACTTTGTCCCCAGAAGAGAAGAAAAACTGAAGAAAATTGTGAAGATGAGGAGACAGAAAATGAAGGTGCGAGTGTTGATGACCAAAAGCTTGATGGAAGCTGCATAAGATCTGAACCAGAGGCTGGAACTGAAGCTATAACCCCAGAAACTGATCTAAGCTTGAAGTCGCACTCACGTGAAAAGAAGCTTATTGATTTTAGCGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGGAGGGTCGAGCCTCAGAATGGGCATTGCTGAGGCGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGTCACATCCAGATACTGTGGCGCGAACTGTTGAACTAATAGAAAAGGAATGCACAGTAGATTTCATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGCATGAAAAGTGTTGTAGAAGTAGCTTCAGGCACAGTCGATATACCAATAACTATAAAGGTACGGACAGCTTATTTTGAAGGGAGGAATCGTATCGACTCTCTGATAGCAGACTTTAGCTCTTGGGGAGCTAATGCAGTGACAATACATGGTAGGTCACGGCAACAACGCTATAGCAAGCTTGCTGACTGGGATTACGTATATCAGTGTACCAAGAAAGCACCTAATACTTTGCAAGTAGTGGGGAATGGAGATGTTTTTTCATTTGTAGACTGGAAAAACCACAAAACTGAATGCCCTGAACTTGCTACATGCATGATTGCCCGCGGCGCACTGATTAAACCTTGGATCTTTACAGAGATAAAGGAACAGCGACATTGGGACATCAGTTCTGGCGAGCGTTTAAATATTTTCAAAGATTTTGTGCATTTTGGTCTTCAACATTGGGGGTCAGATACAAAAGGGGTGGAGACCACCAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTACATACCTGTTGGTCTTTTGGATGTGGTTCCACAACGAATAAATTGGCGTCCACCATCTTACTATGGGCGTGATGAGCTTGAGACACTGATGGCCTCCGACTCTGCAGCTGACTGGGTGCGATTATCAGAGATGTTACTTGGCAAAGTTCCAGATGGCTTTACTTTTGCACCGAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTAA 2064 0.4196 MEDCKQSTLVIDQTTEQLIARCIAPVKKDFLRPPPDRTITSSTQNDNKPPVLAKEKKSKRQLKRERLQDQKSTKNLCPEISKSGDVNSCRYQDKCRFSHDIEAFKEQKLPDLEGECPFLKFEGSCPYGVSCRFLSTHEEGKSLSSNGLKERLEVNGFSKHVQKLLWKNKMTFPKADAKLKTLGLLNKSKGNDVENKDGGEKRVQSDDNGSCAVTSELENNDGGDKCRQSDDDGSCGVTADSDSKLEISAEVIKDDDGINRELESGTLCPQKRRKTEENCEDEETENEGASVDDQKLDGSCIRSEPEAGTEAITPETDLSLKSHSREKKLIDFSEKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLEGRASEWALLRRHSSEDLFGVQICGSHPDTVARTVELIEKECTVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSVVEVASGTVDIPITIKVRTAYFEGRNRIDSLIADFSSWGANAVTIHGRSRQQRYSKLADWDYVYQCTKKAPNTLQVVGNGDVFSFVDWKNHKTECPELATCMIARGALIKPWIFTEIKEQRHWDISSGERLNIFKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRINWRPPSYYGRDELETLMASDSAADWVRLSEMLLGKVPDGFTFAPKHKSNAYDRAENG* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0260 687 ProSitePatterns Uncharacterized protein family UPF0034 signature. 419 437 IPR018517 GO:0008033|GO:0017150|GO:0050660
Mal2g0260 687 MobiDBLite consensus disorder prediction 190 204 - -
Mal2g0260 687 Gene3D - 67 146 - -
Mal2g0260 687 Gene3D Aldolase class I 331 573 IPR013785 -
Mal2g0260 687 MobiDBLite consensus disorder prediction 188 240 - -
Mal2g0260 687 MobiDBLite consensus disorder prediction 50 72 - -
Mal2g0260 687 MobiDBLite consensus disorder prediction 31 79 - -
Mal2g0260 687 Coils Coil 272 292 - -
Mal2g0260 687 MobiDBLite consensus disorder prediction 269 311 - -
Mal2g0260 687 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 16 687 - -
Mal2g0260 687 Pfam CCCH-type zinc finger 76 100 IPR041367 -
Mal2g0260 687 ProSiteProfiles Zinc finger C3H1-type profile. 71 102 IPR000571 GO:0046872
Mal2g0260 687 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 16 687 - -
Mal2g0260 687 ProSiteProfiles Zinc finger C3H1-type profile. 115 140 IPR000571 GO:0046872
Mal2g0260 687 SUPERFAMILY FMN-linked oxidoreductases 335 648 - -
Mal2g0260 687 Pfam Dihydrouridine synthase (Dus) 338 572 IPR035587 -
Mal2g0260 687 CDD DUS_like_FMN 335 570 IPR035587 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal2g0260 Dus 4.5e-50 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0260 K05544 - gmx:100783494 1057.74