Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0175 ATGAAGCTCACAGTGAAGACTCTGAAAGGAAGCCATTTCGAAATCAGGGTTCATCCCTCTGATTCTATAATGGGTGTGAAAAAGAATATTGAAGACGTACAAGGTAAAGATAATTACCCATGCGGACAACAATTGCTGATTCACAATGGTAAGGTTTTGAAAGATGAAACTACTTTAGCTGATAATAAGGTCTCCGAAGATGGCTTTCTTGTTGTCATGCTTAGTAAGAGTAAAGCCTCGGGATCTGCTGGAACTTCATCTACTCAGACCGTTAGCAATCCACCTATAACTGTGCCAACACCAGATTCCACACCTGCAGTACAAACTCAATCTGCAAACAACAACACATCTCCAGCAGTTGCCGCAACTACAAATGTTACTGCAGATACTTATGAACAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAACTTATGGACATGGGTGGTGGCAGCTGGGATAGAGATACCGTTAATCGCGCTCTTCGTGCAGCTTTCAATAATCCGGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAAGTTGCTGTACCAGCTGCTCAATACCCAAGTAATCAAACTGCAACAGGTGGGGTCACTACAGGAGTTGTTCCTGGGGTCCCTAACTCGTCTCCATTGAATATGTTTCCACAGGAGACAATTTCTGGCGCTGGAGCTGGAGCAGGAGCAGGAGCAGGAGCTGGATCGCTCGACTTCTTGAGGAACAATCCCCAGTTTCAAGCATTACGGACAATGGTGCAATCCAATCCACAAATTCTCCAGCCTGTACTTCAGGAGCTCGGAAAGCAAAATCCCGGTCTCTTGAGACTAATTGACGAGCATCATTCTGAGTTTCTTCAGTTGATAAATGAACCCATGGACGGTACTGAAGGAGATAATTTTGATCAGGCGGAGCAAGACATGCCCCACGCTGTCAATGTGACGCCAGCTGAGCAGGAGGCAATTGGAAGGCTAGAGGCTATGGGATTTGATAGAGCCTCTGTCATAGAGGCATTTTTGGCATGTGATCGCGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGGGATTTTGAGGATTAA 1119 0.4531 MKLTVKTLKGSHFEIRVHPSDSIMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKASGSAGTSSTQTVSNPPITVPTPDSTPAVQTQSANNNTSPAVAATTNVTADTYEQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEVAVPAAQYPSNQTATGGVTTGVVPGVPNSSPLNMFPQETISGAGAGAGAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0175 372 PRINTS DNA repair protein Rad23 signature 354 369 IPR004806 GO:0006289
Mal2g0175 372 PRINTS DNA repair protein Rad23 signature 273 295 IPR004806 GO:0006289
Mal2g0175 372 PRINTS DNA repair protein Rad23 signature 322 338 IPR004806 GO:0006289
Mal2g0175 372 PRINTS DNA repair protein Rad23 signature 339 353 IPR004806 GO:0006289
Mal2g0175 372 SUPERFAMILY UBA-like 309 369 IPR009060 GO:0005515
Mal2g0175 372 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 142 185 IPR015940 -
Mal2g0175 372 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Mal2g0175 372 MobiDBLite consensus disorder prediction 80 118 - -
Mal2g0175 372 SUPERFAMILY XPC-binding domain 244 309 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mal2g0175 372 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Mal2g0175 372 SMART CBM 245 288 IPR006636 -
Mal2g0175 372 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 326 366 IPR015940 -
Mal2g0175 372 Gene3D - 1 80 - -
Mal2g0175 372 SMART uba_6 144 184 IPR015940 -
Mal2g0175 372 SMART uba_6 328 365 IPR015940 -
Mal2g0175 372 Gene3D - 137 187 - -
Mal2g0175 372 SUPERFAMILY UBA-like 140 192 IPR009060 GO:0005515
Mal2g0175 372 TIGRFAM rad23: UV excision repair protein Rad23 1 371 IPR004806 GO:0006289
Mal2g0175 372 Pfam UBA/TS-N domain 328 363 IPR015940 -
Mal2g0175 372 Pfam UBA/TS-N domain 144 182 IPR015940 -
Mal2g0175 372 Pfam XPC-binding domain 247 302 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mal2g0175 372 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 371 - -
Mal2g0175 372 CDD UBA1_Rad23_plant 138 186 - -
Mal2g0175 372 SMART ubq_7 1 75 IPR000626 GO:0005515
Mal2g0175 372 Gene3D - 236 303 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mal2g0175 372 CDD Ubl_Rad23 1 74 - -
Mal2g0175 372 Gene3D - 319 367 - -
Mal2g0175 372 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mal2g0175 372 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0175 Mal-Chr2 2031546 2036484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0175 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.18e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0175 K10839 - gmx:100804038 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0175 2 2031546 2036484 Mal2g0175 2 2031546 2036484 PCT