Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0172 ATGAAGAAGAACCAAAACCAAAACCTGGGTCGTATGTTTTCGAATCCACTGAGCGAGATCGACACCAACGTTGAGCTGAGGCATAGCCGTAGCTGCAGCACTACGACTCACTATGTATCCGACAACAACAAGGAAAACACCAATGTCGTTTCTCATTCTTCTCTTCCAAAGTCCAAGTCATTATCAACAAACAGGATTGTTAAGTCTACTTCGTTACAGTTCTGTATGCAAATCAACGACCCTCCTCTTGCTTCCTCTGATTCTTCTCACTTTTCCAACTCTTTGAAAATTTGGGACCACTCTGACTCCGAAGCTGCTGCTCCTGCTTCCTCTTGGTCCACTTTACCCAACAAGTCTTTGATATGTAGACCATTGCCTATAGATATTGGAAGGTGTACTTGTGTTATTGTCAAGGAACCAACGCCTCAGGGTCTCTCTGCTGGCACTTTCTTCTCTCTTTATACCTATGAAGGTCAGGGGAGACAGAATAGGAAACTGGCTGTGGCCCACCACAAGCGGCGGGGTAGTGGGAGGTCTCACTTCACCGTAGCTCAGAATGTCAAAGGACTAGTCTCCAATTCAGATGACACTTTTCTCGGGACAGTAACCGCTAACCTTACGGGCTCAAAATACCACATTTGGGATCAGGGATATCGCCATAAGTCCCGTAGTAAACAACCAAAACCACCTCTTGCTGTTGTTGAGTATGTACCTACAATAGCTACATGTACAGGAACTCACAGAAGCATCAAAGCTTATATACCCAACCATCAATCTATGTCTTTCAAGAACACCAACCAGGTACAGCATATTAAGGGACTGCCAGTGAATTGGGAGGGAAAAATGGACAAAGTCCATCAACTATTCTCAAGGGATCCACTCTACAATAAGAGTACAAAGCAATTTGAGCTTGACTTTAGAGATAAAGGAAGGGCAGGACTTGGAATTCAGAGATCCGTCAAAAACTTTCAGCTCACTTTAGAGGAGAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGGTGGGAAAATCTAATTTTGTTATGGACTATAGATATCCTTTGACTGGTTACCAGGCGTTTTGCATATGTTTGGCGTCCATTGATGCAAAGCTTTGTTGCGTAGTGTAG 1128 0.4424 MKKNQNQNLGRMFSNPLSEIDTNVELRHSRSCSTTTHYVSDNNKENTNVVSHSSLPKSKSLSTNRIVKSTSLQFCMQINDPPLASSDSSHFSNSLKIWDHSDSEAAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPTPQGLSAGTFFSLYTYEGQGRQNRKLAVAHHKRRGSGRSHFTVAQNVKGLVSNSDDTFLGTVTANLTGSKYHIWDQGYRHKSRSKQPKPPLAVVEYVPTIATCTGTHRSIKAYIPNHQSMSFKNTNQVQHIKGLPVNWEGKMDKVHQLFSRDPLYNKSTKQFELDFRDKGRAGLGIQRSVKNFQLTLEENGKQTILQLGRVGKSNFVMDYRYPLTGYQAFCICLASIDAKLCCVV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0172 375 PRINTS Tubby superfamily signature 352 374 IPR000007 -
Mal2g0172 375 PRINTS Tubby superfamily signature 198 222 IPR000007 -
Mal2g0172 375 PRINTS Tubby superfamily signature 331 350 IPR000007 -
Mal2g0172 375 PRINTS Tubby superfamily signature 311 327 IPR000007 -
Mal2g0172 375 PANTHER TUBBY-RELATED 34 373 - -
Mal2g0172 375 MobiDBLite consensus disorder prediction 35 56 - -
Mal2g0172 375 Pfam Tub family 123 368 IPR000007 -
Mal2g0172 375 SUPERFAMILY Tubby C-terminal domain-like 109 373 IPR025659 -
Mal2g0172 375 Gene3D Tubby Protein; Chain A 113 374 IPR025659 -
Mal2g0172 375 PANTHER TUBBY-LIKE PROTEIN 8 34 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0172 Mal-Chr2 2010525 2012805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0172 57 268 TUB Transcription Factor Family AT1G16070 54.299 7.49e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal2g0172 Tub 7e-41 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0172 K19600 - gmx:100803500 480.33