Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0164 ATGGAAATGGTTAATAACCAAAGAAAGAAAAACACAGGGCGCAAGAAGATTGAGATCAAGAAGGTTGAAAAAGAAAACCACAAACAAGTCACTTTCTCAAAAAGAAGAAAAGGTTTATTCAGAAAAGCAAGTGAACTTTGTGTCTTATGTGATGTTCATGCAGCCATCATTGTGTTTTCCCCTGGTGACAAACTATTCTGTTTTGGTAAACCTGACACTGATACTGTCCTCAATAACTACATCAAAGGAACCACTGAGTTTGAGGATTCAAAGTCAACAGAAAACTTTCCGACCAATGAAGATTACAATAGACAATATGAGGAGGCACTAAAGATGTTGAAGTCGGAAAAGAAGACACTAGAAGATTTTCAAAACTTGGCTCAGCTTTTCAACAAGGGTGAATGGTGGAATGATTCAATTGATGACATGAGTAAAGATCAACTTGAACAATTTATGTTGTCCCTTTATGAGTTAAGGAGGAAGCTTCAGGAAAGGGCTGATCAACATTGTCATGAAGCCAAGTGA 525 0.3714 MEMVNNQRKKNTGRKKIEIKKVEKENHKQVTFSKRRKGLFRKASELCVLCDVHAAIIVFSPGDKLFCFGKPDTDTVLNNYIKGTTEFEDSKSTENFPTNEDYNRQYEEALKMLKSEKKTLEDFQNLAQLFNKGEWWNDSIDDMSKDQLEQFMLSLYELRRKLQERADQHCHEAK* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0164 174 SUPERFAMILY SRF-like 13 84 IPR036879 GO:0003677|GO:0046983
Mal2g0164 174 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Mal2g0164 174 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Mal2g0164 174 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Mal2g0164 174 Coils Coil 99 126 - -
Mal2g0164 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Mal2g0164 174 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Mal2g0164 174 PANTHER MADS BOX PROTEIN 9 171 - -
Mal2g0164 174 Gene3D - 24 106 IPR036879 GO:0003677|GO:0046983
Mal2g0164 174 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Mal2g0164 174 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 9 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0164 Mal-Chr2 1890950 1891474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0164 9 168 Type I MADS-box Gene Family AT5G60440 37.126 2.37e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g0164 SRF-TF 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0164 - - cam:101502875 228.024