Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g6081 ATGGATGATCGCCGTGCTTACGCAGCTCAAATGGCTTATGATAATTTCTGCAGGAAAAAAAAATATTTTAAAAAGAGAGGCCCGAAGAAACCCTGGCATATTGTGTTTCGTAATAATCTTCCCACTTTTACCTACTCCTCTTTCGATTCCAACACCCATCCGATCATCGGATCTTGCTCCTTCTGTAACATGGAGTTCGTAGATGGCGACAAAGAGTGTATACTTCCAGAATGCAAGCACGGTATGCACTACAATTGCGCCGCTCAATGGGCTAAAGAACACATCTCCAGCTCCGCTAAGTGTCCAACTTGCGGAATCCAGTTTCGCAAACCAGTGCCTCCGCATATGTTGGAAATGGTTAAGATCATAAGCTTGCCATTTTCTCCTCCTTTGTCATCATTGGCAATTGGTGCTTCGAGCTCTTCCCGTGGTCTTTTGCCTCTTTGTGCTAACTTTAATGGTGGAAATGTCTCCCCTAATATTGGTGGCACTAACAGGAACACCACAAAGGTGGCAGAGAAGGAGGAGGAGCCAAATTCTATCTTTGGTCACGATCTTATTTTTTTCTTTCTTGGTGTCATAAGATATCTCAGCTCACAAGTTTTAAGATTAATGCATTTTAAAGATCTGAAGCGTATTTAA 642 0.4252 MDDRRAYAAQMAYDNFCRKKKYFKKRGPKKPWHIVFRNNLPTFTYSSFDSNTHPIIGSCSFCNMEFVDGDKECILPECKHGMHYNCAAQWAKEHISSSAKCPTCGIQFRKPVPPHMLEMVKIISLPFSPPLSSLAIGASSSSRGLLPLCANFNGGNVSPNIGGTNRNTTKVAEKEEEPNSIFGHDLIFFFLGVIRYLSSQVLRLMHFKDLKRI* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g6081 213 ProSiteProfiles Zinc finger RING-type profile. 59 104 IPR001841 -
Mal1g6081 213 Pfam Ring finger domain 58 104 IPR001841 -
Mal1g6081 213 SMART ring_2 59 104 IPR001841 -
Mal1g6081 213 CDD RING-H2 59 104 - -
Mal1g6081 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 111 IPR013083 -
Mal1g6081 213 SUPERFAMILY RING/U-box 37 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g6081 Mal-Chr1 139344489 139346166 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g6081 39 104 C3H Transcription Factor Family AT1G76410 39.394 2.22e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g6081 - - han:110941708 60.4622