Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g6078 ATGGTTAGGACAAAGTTTGCTCTTAACATTCTGTTTATTGGTCATGTCAACTCCGGGAAGTCAACAACTGCTGGTCATTTGATCTACAAGCTTGGAGGTATTGAAAAGAATGTGATTGAGAGATTTGAGAAAGAAGCTGCTGAGATAAACAGACGTTCATTCAAATATGCTTGGGTGCTTGACAAGCTCAAGGCCGAGCGTGAAAGAGGTATCACAATCGACATTTCTCTATGGAACTTTGAGACAACCAACCACTGCTGCACTCTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATCACCGAAGCATCCCAAGCTGACTGTGCTGTTCTTATCATTGATTCTACAACTGGTGGTTTTGAAGCTGGTTTTTGTAATGATGGTCAGACCACTGAACATGCTCTTCTTGCCTTCACTCTTGGTGTGAATCAAATGATCTGTTGCTGCAACAAGATGGATGCCACTACACCCAAATACTCCAAGGATAGGTATGAAGAAATTGTGAAGCAAGTTTCACCCTTTTTGAGCAAGGTTGGCTATAACCTAGATAAAATTCCGTTTATTCCAATCTCTGGTTATGAGGGAGATAACATCATTGACCGCTCTACTAACCTTGACTGGTACAACGGTCCTACCCTTCTTGAAGCTCTTAACCAAATGGGAAGGCCTAAGAGGTCAAGGTTTGTATTCAGGCCTCTCCGATTACCACTTCAAGATGTCTACAAGATTGGAGGAATTGGAATTGTGCCTGTGGGACGTGTTGAGACTGGTATCTTGACACCTGGAATGGTGTTGACTTTTGCCCCAACTGGGCTCCAAACTGAAGTCAAGTTTGTGGAGATGCACCATAAACCTCTCATTCAGGCCCTTCCTGGTGACATTGTGGGATTTCATGTTATGGATGTGTCTACTAAGGATCTCAGGCGAGGCTATGTTGCCTCTGACTCCCAGTTTACCCCAGCTATGGAGGCCGCTGAATTTACATCTCAGGTTATCATCTTGAATCACCCTGGTCAGATTGGAAATGGCTATACACCTATTCTCGACTGCCACACCTCCCACATTGCTGTCAGGTTTGCTAAGCTTGTTAGCAAGTTTGATAGGAATACTAATATGGAAATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCAATCCCATGGTGGTAGAGACTTTTCAAGCATATCCTTCACTCGGCCGTTTTGCGGTCAAAGATGTATCAAATTTTTCAGCAATGCTTCTCTCAATTGACAATTTCTTTTTTTGA 1305 0.4314 MVRTKFALNILFIGHVNSGKSTTAGHLIYKLGGIEKNVIERFEKEAAEINRRSFKYAWVLDKLKAERERGITIDISLWNFETTNHCCTLIDAPGHRDFIKNMITEASQADCAVLIIDSTTGGFEAGFCNDGQTTEHALLAFTLGVNQMICCCNKMDATTPKYSKDRYEEIVKQVSPFLSKVGYNLDKIPFIPISGYEGDNIIDRSTNLDWYNGPTLLEALNQMGRPKRSRFVFRPLRLPLQDVYKIGGIGIVPVGRVETGILTPGMVLTFAPTGLQTEVKFVEMHHKPLIQALPGDIVGFHVMDVSTKDLRRGYVASDSQFTPAMEAAEFTSQVIILNHPGQIGNGYTPILDCHTSHIAVRFAKLVSKFDRNTNMEIEKEPKFLKNGDAGIIKMIPTNPMVVETFQAYPSLGRFAVKDVSNFSAMLLSIDNFFF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g6078 434 CDD EF1_alpha_III 325 418 - -
Mal1g6078 434 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Mal1g6078 434 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Mal1g6078 434 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Mal1g6078 434 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Mal1g6078 434 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Mal1g6078 434 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 424 IPR004539 GO:0003746|GO:0005525|GO:0006414
Mal1g6078 434 Gene3D Translation factors 325 425 - -
Mal1g6078 434 Gene3D Translation factors 232 318 - -
Mal1g6078 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 250 IPR027417 -
Mal1g6078 434 CDD EF1_alpha_II 234 319 - -
Mal1g6078 434 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 328 419 IPR009001 -
Mal1g6078 434 Pfam Elongation factor Tu GTP binding domain 8 221 IPR000795 GO:0003924|GO:0005525
Mal1g6078 434 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Mal1g6078 434 CDD EF1_alpha 9 227 - -
Mal1g6078 434 Gene3D - 1 226 IPR027417 -
Mal1g6078 434 Pfam Elongation factor Tu C-terminal domain 325 418 IPR004160 -
Mal1g6078 434 PANTHER TRANSLATION FACTOR 1 424 - -
Mal1g6078 434 SUPERFAMILY Translation proteins 235 324 IPR009000 -
Mal1g6078 434 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 227 IPR000795 GO:0003924|GO:0005525
Mal1g6078 434 PANTHER ELONGATION FACTOR 1-ALPHA 1 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g6078 Mal-Chr1 139325329 139326633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g6078 1 425 Eukaryotic Initiation Factors Gene Family AT5G60390 76.000 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g6078 K03231 - gmx:100801611 660.218