Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g6060 ATGAAGTCATTTACGGATCTGGGTTTATCTTTTCAATTGGTGGAAGCTTGTGGAAAACGACTGGTTTGGTATAATCCGATGGAGATTCAGACACAAGTGATTCCCCTTGCGCTACAAGGAAAAGATGATGTGTTTGCAATTTCCCCACCGGGTACTGGTAAGGTTGGGGCTTATGTTCTTCCTATACTCCAGGCGCTCTTAGATGCCGGACCCACCAACCTAAACCCTTTCTTTGCTTGTGTGCTGGTTCCTACAAAGGACCTTGCTTTTCAAATTGCTGAATACTTTATAGCTCTAGGTTCTCCATTTGGTGTCAAGTGTGCTATTCTTGTTGAAATGTACGACAAGGTACATCAATCCAAGCAGATTTCACAGCAACCTCATATTATTGTTGGGACCCCTGGACAAATCTTTAATCACCTAAAACACACCCAAGGATTTTCTCATGCTCTTGCTAGTTTAAAATACCTGGTTATAGATGACGCACACCTGATGTTGAATGATCACTCTGAGAAACAACTATATGATATTTCAGAAATGATTCCTAGTGAGCGGAAAACATTTCTTTTTTCATCTACATTGACAGAGAAGGTGCATACAATCCAAAGTGTGTGTTTAAGGAATCCTGTGAAGATTGATGTATCTTCAAAATATTCTATTGTGGACACACTGCAGCAGCAAAGTTGCTTTATGCGAGCAAAACTTAAGGATTGCTATCTTGCATACACTCTCGCTGAAATGACTGGAAAAACATCAATGGTATTCACCGAAACTTGTAGTTCCACGCTTCTTCTGGCTTTGATTCTTAATAATCTTGGTTTCAGAGCCATCCCGATTATTATTTTTATGAGTCAGGCAAAGAAACTTGAATCCTTGAATGCGTTCAAGTCCGGGGAGTGCAGTATTCTCCTTTGTAGTGACAGAGCTAGTAGGGGACTAGATATTCCAGCGGTAGATATGTTGATTAACTACGGCATTCCTAGAGAACCAAACGATTATATGTACCGCGTGGGATGCACTGCTCATGCTGATGTTGCCATTTCCTTTGTGGGCAGCAGTCAAGATGCGGAACGATTCAAAATGATAGAGAGATTTATAGGCAATAGGCTACCAGTGTATCCTGCACCACATGAGGACGTTTTGCTTTTGGAAAAGCGTGTTAGTGAGGCCGAAATATATGCACGAAAGGAAATGAAAGAATTCGGTTGGAAGAGCGGAGGATATTTAGAAGATGAGGATATTTAG 1245 0.4112 MKSFTDLGLSFQLVEACGKRLVWYNPMEIQTQVIPLALQGKDDVFAISPPGTGKVGAYVLPILQALLDAGPTNLNPFFACVLVPTKDLAFQIAEYFIALGSPFGVKCAILVEMYDKVHQSKQISQQPHIIVGTPGQIFNHLKHTQGFSHALASLKYLVIDDAHLMLNDHSEKQLYDISEMIPSERKTFLFSSTLTEKVHTIQSVCLRNPVKIDVSSKYSIVDTLQQQSCFMRAKLKDCYLAYTLAEMTGKTSMVFTETCSSTLLLALILNNLGFRAIPIIIFMSQAKKLESLNAFKSGECSILLCSDRASRGLDIPAVDMLINYGIPREPNDYMYRVGCTAHADVAISFVGSSQDAERFKMIERFIGNRLPVYPAPHEDVLLLEKRVSEAEIYARKEMKEFGWKSGGYLEDEDI* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g6060 414 PANTHER BNAC02G41920D PROTEIN 2 412 - -
Mal1g6060 414 PANTHER RNA HELICASE 2 412 - -
Mal1g6060 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 344 IPR027417 -
Mal1g6060 414 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 212 IPR014001 -
Mal1g6060 414 SMART ultradead3 22 227 IPR014001 -
Mal1g6060 414 Pfam DEAD/DEAH box helicase 28 200 IPR011545 GO:0003676|GO:0005524
Mal1g6060 414 Gene3D - 220 379 IPR027417 -
Mal1g6060 414 Pfam Helicase conserved C-terminal domain 241 341 IPR001650 -
Mal1g6060 414 CDD SF2_C_DEAD 224 350 - -
Mal1g6060 414 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 381 IPR001650 -
Mal1g6060 414 Gene3D - 1 218 IPR027417 -
Mal1g6060 414 SMART helicmild6 263 338 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g6060 Mal-Chr1 138937853 138962530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g6060 43 365 Eukaryotic Initiation Factors Gene Family AT5G11170 27.492 4.89e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g6060 K14777 - gmx:100775796 440.269