Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g6042 ATGGTTAGGACAAAGTTTGCTCTTAACATTCTGTTTATTGGTCATGTCAACTCCGGGAAGTCAACAACTGCTGGTCATTTGATCTACAAGCTTGGAGGTATTGAAAAGAATGTGATTGAGAGATTTGAGAAAGAAGCTGCTGAGATAAACAGACGTTCATTCAAATATGCTTGGGTGCTTGACAAGCTCAAGGCCGAGCGTGAAAGAGGTATCACAATCGACATTTCTCTATGGAACTTTGAGACAACCAACCACTGCTGCACTCTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATCACCGAAGCATCCCAAGCTGACTGTGCTGTTCTTATCATTGATTCTACAACTGGTGGTTTTGAAGCTGGTTTTTGTAATGATGGTCAGACCACTGAACATGCTCTTCTTGCCTTCACTCTTGGTGTGAATCAAATGATCTGTTGCTGCAACAAGATGGATGCCACTACACCCAAATACTCCAAGGATAGGTATGAAGAAATTGTGAAGCAAGTTTCACCCTTTTTGAGCAAGGTTGGCTATAACCTAGATCAAATTATGTTTGTTCCCATCTCCGGTTATGAGGGAGATAACATCATTGACCGCTCTACTAACCTTGACTGGTACAACGGTCTTACACTTCTTGAAGCTCTTGACCAAATCAGAAGGCCTAAGAGGTCAAGGTTTGTATTCAGGCCTCTCCGATTACCACTTCAAGATGTCTACAAGATTGGAGGAATTGGAATTGTGCCTGTGGGACGTGTTGAGACTGGTATCTTGACACCTGGAATGGTGTTGACTTTTGCCCCAACTGGGCTCCAAACTGAAGTCAAGTTTGTGGAGATGCACCATAAACCTCTCATTCAGGCCCTTCCTGGTGACATTGTGGGATTTCATGTTATGGATGTGTCTACTAAGGATCTCAGGCGAGGCTATGTTGCCTCTGACTCCCAGTTTACCCCAGCTATGGAGGCCGCTGAATTTACATCTCAGGTTATCATCTTGAATCACCCTGGTCAGATTGGAAATGGCTATACACCTATTCTCGACTGCCACACCTCCCACATTGCTGTCAGGTTTGCTAAGCTTGTTAGCAAGTTTGATAGGAATACTAATATGGAAATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCAAGCCCATGGTGGTAGAGACTTTTCAAGCATATCCTTCACTCGGCCGTTTTGCGGTCAGAGACATGCGTCAAACTGTGGCTATTGGAGTCATCAAAGATGTGAAGAAGAAGGATCCTGCACGGTCAAATCAAGGATGGGAAGAAGAAGTAATCCGCATGATGGAGGAGAGATGA 1365 0.441 MVRTKFALNILFIGHVNSGKSTTAGHLIYKLGGIEKNVIERFEKEAAEINRRSFKYAWVLDKLKAERERGITIDISLWNFETTNHCCTLIDAPGHRDFIKNMITEASQADCAVLIIDSTTGGFEAGFCNDGQTTEHALLAFTLGVNQMICCCNKMDATTPKYSKDRYEEIVKQVSPFLSKVGYNLDQIMFVPISGYEGDNIIDRSTNLDWYNGLTLLEALDQIRRPKRSRFVFRPLRLPLQDVYKIGGIGIVPVGRVETGILTPGMVLTFAPTGLQTEVKFVEMHHKPLIQALPGDIVGFHVMDVSTKDLRRGYVASDSQFTPAMEAAEFTSQVIILNHPGQIGNGYTPILDCHTSHIAVRFAKLVSKFDRNTNMEIEKEPKFLKNGDAGIIKMIPTKPMVVETFQAYPSLGRFAVRDMRQTVAIGVIKDVKKKDPARSNQGWEEEVIRMMEER* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g6042 454 PANTHER TRANSLATION FACTOR 1 440 - -
Mal1g6042 454 Gene3D Translation factors 232 318 - -
Mal1g6042 454 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 435 IPR004539 GO:0003746|GO:0005525|GO:0006414
Mal1g6042 454 Pfam Elongation factor Tu C-terminal domain 325 431 IPR004160 -
Mal1g6042 454 CDD EF1_alpha_III 325 428 - -
Mal1g6042 454 Pfam Elongation factor Tu GTP binding domain 8 222 IPR000795 GO:0003924|GO:0005525
Mal1g6042 454 Gene3D - 1 226 IPR027417 -
Mal1g6042 454 PANTHER ELONGATION FACTOR 1-ALPHA 1 440 - -
Mal1g6042 454 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 328 432 IPR009001 -
Mal1g6042 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 250 IPR027417 -
Mal1g6042 454 CDD EF1_alpha_II 234 319 - -
Mal1g6042 454 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 227 IPR000795 GO:0003924|GO:0005525
Mal1g6042 454 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Mal1g6042 454 CDD EF1_alpha 9 227 - -
Mal1g6042 454 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Mal1g6042 454 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Mal1g6042 454 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Mal1g6042 454 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Mal1g6042 454 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Mal1g6042 454 Gene3D Translation factors 325 432 - -
Mal1g6042 454 SUPERFAMILY Translation proteins 235 324 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g6042 Mal-Chr1 138651777 138653141 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g6042 1 436 Eukaryotic Initiation Factors Gene Family AT5G60390 77.752 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g6042 K03231 - gmx:100801611 687.567