Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g6038 | ATGATCTGTTGCTGCAACAAGATGGATGCCACTACACCCAAATACTCCAAGGATAGGTATGAAGAAATTGTGAAGCAAGTTTCACCCTTTTTGAGCAAGGTTGGCTATAACCTAGATCAAATTATGTTTGTTCCCATCTCCGGTTATGAGGGAGATAACATCATTGACCGCTCTACTAACCTTGACTGGTACAACGGTCTTACACTTCTTGAAGCTCTTGACCAAATCAGAAGGCCTAAGAGGGCAATGTTAATATTCAGGCCTCTCCGATTACCACTTCAAGATGTCTACAAGATTGGAGGAATTGGAATTGTGCCTGTGGGACGTGTTGAGACGGGTATCTTGAGACCTGGAATGGTGTTGACTTTTGCCCCAACTGGGCTCCAAACTGAAGTGAAATCTGTAGAGATGTACCATGAAGCTTGCATTCAGGCCCTTCCTGGTTATATTGTGGGATTTAATGTTACAAATGTGTCTGATAAGGATCTCAGGCAAGGCTATGTTGCCTCAAACTCCCAGCATAACCCGGCTATGGAGGCCACTGAATTTACATCTCAGGTTATCATCTTGAATCACCCTGGTCAGATTGGAAAGGGCTATACACCTATTCTCGACTGCCACACCTCCCACATTGCTGTCAGGTTTGCTAAGCTTGTTAGCAAGTTTGATAGGAATACTAATATGGAAATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTATTATTAAGATGATACCCACCAAGCCCATGGTGGTAGAGACATTTACTGGATATCCTTCACTCGGCCGTTTTGCTGTCAGAGACATGCGTCAAACTGTGGCTATTGGAGTCATCAAGGATGTGAAGAAGAAGGATCCTGCACGGTCAAATCAAGGATGGGAAGAAGTAATCCGCATGATGGAGGAGGGATGA | 921 | 0.443 | MICCCNKMDATTPKYSKDRYEEIVKQVSPFLSKVGYNLDQIMFVPISGYEGDNIIDRSTNLDWYNGLTLLEALDQIRRPKRAMLIFRPLRLPLQDVYKIGGIGIVPVGRVETGILRPGMVLTFAPTGLQTEVKSVEMYHEACIQALPGYIVGFNVTNVSDKDLRQGYVASNSQHNPAMEATEFTSQVIILNHPGQIGKGYTPILDCHTSHIAVRFAKLVSKFDRNTNMEIEKEPKFLKNGDAGIIKMIPTKPMVVETFTGYPSLGRFAVRDMRQTVAIGVIKDVKKKDPARSNQGWEEVIRMMEEG* | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g6038 | 306 | Gene3D | - | 1 | 79 | IPR027417 | - | |
| Mal1g6038 | 306 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 181 | 285 | IPR009001 | - | |
| Mal1g6038 | 306 | PANTHER | TRANSLATION FACTOR | 1 | 293 | - | - | |
| Mal1g6038 | 306 | SUPERFAMILY | Translation proteins | 86 | 215 | IPR009000 | - | |
| Mal1g6038 | 306 | Pfam | Elongation factor Tu domain 2 | 105 | 168 | IPR004161 | GO:0005525 | |
| Mal1g6038 | 306 | CDD | EF1_alpha_II | 87 | 172 | - | - | |
| Mal1g6038 | 306 | CDD | EF1_alpha_III | 178 | 281 | - | - | |
| Mal1g6038 | 306 | Gene3D | Translation factors | 178 | 285 | - | - | |
| Mal1g6038 | 306 | PANTHER | ELONGATION FACTOR 1-ALPHA | 1 | 293 | - | - | |
| Mal1g6038 | 306 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 103 | IPR027417 | - | |
| Mal1g6038 | 306 | Pfam | Elongation factor Tu C-terminal domain | 178 | 284 | IPR004160 | - | |
| Mal1g6038 | 306 | Gene3D | Translation factors | 85 | 171 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g6038 | Mal-Chr1 | 138632293 | 138633213 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal1g6038 | 1 | 289 | Eukaryotic Initiation Factors Gene Family | AT5G60390 | 75.087 | 2.58e-163 | 460 |