Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g6013 ATGGGTTGGTATGTTCCGCGAAAGATTCAATCAAAAGTGATCCCCATTGCGCTACATGGTGGAAAAGATGTGTTTGCAATTTCACCACCTCGTTCTGGTAAGACTGCTGCTTATGTTCTTCCTATATTCCAGGCTCTCTTAGATGCTGGACCCAACATAAACCCTTTCTTTGCTTGTGTCATCTCTCCTACAAGGATCCTTGCTTTTGAAATTGCTCGCTACTTTGAAGCCATATGTCCACACTTTGATGTCAAGTTTGCTCTCCTTGTTGCAACCTCCGACATGGTACACCAAACCAACGAGATTTTAAAGCAACCTCATATCATTGTCATAGATGAGGCACACCTGCTCGAATCCAATAAGCACATTGATAAACAACTTGAGTATATTACAGGAAAGATTCCTCCTAACCGAACAACACTTCTTTTTTCAGATTCAATGACGGATAAGATTGACGAATCTATCGAATATCCTGAGCAGCAGCAATGTCATATGTCAGCAGAGCATAAGGTTTGCTACCTTGCATACACTCTCAATAAAATGGATGGAAAAACATCATTGGTATTCGTTCGGGTTTGTGATTTAATGCTTCGTCTGGCTTTGACTCTTAGGAATTTTGGTTTCAATGTCATCCCAATTAATGATCTTATGAGTCAGGCAAAGAGACTTGAAGCCTTGAATGTGTTCAAGTCTGGGAACTGCAATATTCTCATTTGCAACGAGGGAGCTAGTAGGGGACTAGATATTCCAGCAGTAGATATGGTGATTAACTACGACATACCCAACGACCCCAGAGATTATATGCACCGTGTGGGATGGGCTGCTCCTTCTGGAGTTTCCATTTCTTTTGTGAACCCAAATGAGGAGAGATGGTTTGAAATGATAGAGACACATATAGGCAAGAAGCTACCCATGTATCCGGCACAAAATGAGGAAGTACTTCTTTTGAGTAGCCGTGTTAGTGAGGCCAAAAGTTTAGCTGACAAGGTCCGTAAGATCGAAAGCGCGTATTCAAGGAAACATGTGAAGGTTTATGTAGATCCCGAATTGTTGGAGACACTGAAGCAGCAACATGAGAAAACTCAAGAATTTATCTCGGCGCCTGAAAACTCTGAAAATTCAGCTGATGGCGATACTGTTGTTATCAAAACAAATGACGGAGTAGCTCAAAAGGTTGAACGAGTCTTCGGGGTGCAGATTCTGACAAAGTATGGCCTTGCAGCATCCGGAACAGAATTTGAACTTTCCAATGTGGGAAGCAAAGCCCTAGAGACTGCCATTAGGCTCTTAAAAGAACTCCAAGCCAATCAGAAGATCGACGTGGGAGATTTTTCAAATGAGCAACTCAAAGATCTTGTCTTAGCGGTTTATCACCTCGGCTTCAGTGAGCTTCAAAATTTCCTATGTCAGGTCATTGCTGATAGATTACAAAATAAGAGTAAGGAATATATGCAGACATTTTTTGGATTTCAAGAGGAAGAGAGCAAGTTAAAGGAGGAGGATGCTTAG 1509 0.4175 MGWYVPRKIQSKVIPIALHGGKDVFAISPPRSGKTAAYVLPIFQALLDAGPNINPFFACVISPTRILAFEIARYFEAICPHFDVKFALLVATSDMVHQTNEILKQPHIIVIDEAHLLESNKHIDKQLEYITGKIPPNRTTLLFSDSMTDKIDESIEYPEQQQCHMSAEHKVCYLAYTLNKMDGKTSLVFVRVCDLMLRLALTLRNFGFNVIPINDLMSQAKRLEALNVFKSGNCNILICNEGASRGLDIPAVDMVINYDIPNDPRDYMHRVGWAAPSGVSISFVNPNEERWFEMIETHIGKKLPMYPAQNEEVLLLSSRVSEAKSLADKVRKIESAYSRKHVKVYVDPELLETLKQQHEKTQEFISAPENSENSADGDTVVIKTNDGVAQKVERVFGVQILTKYGLAASGTEFELSNVGSKALETAIRLLKELQANQKIDVGDFSNEQLKDLVLAVYHLGFSELQNFLCQVIADRLQNKSKEYMQTFFGFQEEESKLKEEDA* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g6013 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 295 IPR027417 -
Mal1g6013 502 SMART ultradead3 2 176 IPR014001 -
Mal1g6013 502 SMART helicmild6 197 278 IPR001650 -
Mal1g6013 502 SUPERFAMILY Skp1 dimerisation domain-like 444 500 IPR036296 GO:0006511
Mal1g6013 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 15 165 IPR014001 -
Mal1g6013 502 Pfam Helicase conserved C-terminal domain 173 272 IPR001650 -
Mal1g6013 502 PANTHER BNAC02G41920D PROTEIN 1 115 - -
Mal1g6013 502 PANTHER BNAC02G41920D PROTEIN 159 329 - -
Mal1g6013 502 PANTHER RNA HELICASE 1 115 - -
Mal1g6013 502 PANTHER RNA HELICASE 159 329 - -
Mal1g6013 502 Gene3D - 162 347 IPR027417 -
Mal1g6013 502 Pfam DEAD/DEAH box helicase 8 110 IPR011545 GO:0003676|GO:0005524
Mal1g6013 502 CDD SF2_C_DEAD 166 284 - -
Mal1g6013 502 Gene3D - 1 161 IPR027417 -
Mal1g6013 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 150 314 IPR001650 -
Mal1g6013 502 Gene3D Potassium Channel Kv1.1; Chain A 377 502 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g6013 Mal-Chr1 138065392 138074991 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g6013 2 307 Eukaryotic Initiation Factors Gene Family AT3G19760 24.294 1.01e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g6013 K14777 - gmx:100775796 305.064