Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g6009 ATGAAATCATTTACAGATTTGGGAATATGTCATCAATTGGTGGAAATTTGTGAAAAACAAAGGGGACTGGGTTGGTATGATCCGCGAAAGATTCAATCAAAAGTGATCCCCCTTGTGCTACAAGGAAAAGATGTGTTTGCAATTTCCCCACCTCGTTCTGGTAAGACTGGTGCTTATGCTCTTGCTATATTCCAGGCTCTCTTAGATGCTGGACCCAACATAAACCCTTTCTTTGCTTGTGTCATCTCTCCCACAAGGTTCCTTGCTATTGAAATTGCTGGCTACTTTGAAGCCCTATGTATACACTTTGATGTCAAGTTTGCTGTTCTTGTTGCAACCGCCGACATGGTACACCAAACCAACAAGATTTTAAAGAAACCTCATATCATTGTTGGGACCCCTGGAAAAATCATCAGACACCTCAAAGACACCCCAGCATTTTCTCTTGCCAAATTAAAATACCTGGTCATAGATGAGGCACACTTGCTGGAGTCCAATAAGCACATTGATAAACAACTTGAGTATATTACAGGAAAGATTCCTCGTAACCGGACAACACTTCTTTTTTCAGATTCAATGACAGATAAGGTCCATGCAATCCAAAGTATGTATTTAAGGAATCCTGTGAAGATTGACGAATCTATCGAATATCCTGAGCAGCAGCAATGCCATATGTCAGCAGAGCACAAGGATTGCTACCTTGCATACACTCTCAATAAAATGGGTGGAAAAACATCATTGGTATTCGTTCGGGCTTGTGATTTAATGCTTCGTCTGGCTTTGACTCTTAGATATTTTGGTTTCAATGTCATCCCAATTAATGTTCTTATGAGTCAGGCAAAGAGACTTGAAGCCTTGAATTTGTTCAAGTCCGGGGACTGCAAGATTCTCCTTTGTAACGAGGGAGCTAGTAGGGGACTAGATATTCCAGCAGTAGATATGGTGATTAACTACGACATACCCGACAACCCCAAAGATTATATGCACCGTGTGGGATGGGCTGCTCCTTCTGGAGTTGCCATTTCCTTTGTGAACCCAAATGAGGAGAGATGGTTTGAAATGATAGAGACACATATAGGCAAGAAGCTATCCGTGTATCCGGCACAAAATGAGGAAGTACTTCTTTTGAGTAGCCGTGTTAGTGAGGCCAAAAGTTTAGCTGACAAGGAAAAGAACGAATCTGGTTGGTGGAGGATTGGAGGATATTTAGGAGAGGAGGATGTCCGTAAGATCGAAAGAGTGTATTCAACGAATTATGTGAAGGTTTATGTAGATCCCGAATTGTTGGAGACACTGAAGCGGGAACATGAGGTTTATCATCTCCCTTATCCAAAAAAGGAACTCATCTCCGCGACCGAAAACTCTGAAAATTCAGCTGATGGCGATACTGTTGTTATCAAAACAAGTGACGGAGTTGATTACAAGGTTGAACGAGTCATCGCGATGCAGATTCAGACAAAGTATGGCCTTGCAGAATCCGGAACAGAATTTAAACTTTCCAATGTGGGAAGCGAAGCCCTAGAGACTGCCATTAAGCTCTTAAAAGAACTCCAAGCCAATCGGAAAATCTACTTGGGAGATTTTACAGATGAGCAACTCAAAGATCTTGTCATAGCGGTTTATCACCTTGGCTTCAGCGAGCTTCAAAATGCCTTATGTCAGGTCATTGCTAATAGATTACAAAATAAGAGTAAGGAATATATGCTGACATTTTTTGGATTTCAAGAGGAAGAGAGCGAGTTAATGGAGGAGGATGCTTTAGGCATTAGAAAATGA 1776 0.415 MKSFTDLGICHQLVEICEKQRGLGWYDPRKIQSKVIPLVLQGKDVFAISPPRSGKTGAYALAIFQALLDAGPNINPFFACVISPTRFLAIEIAGYFEALCIHFDVKFAVLVATADMVHQTNKILKKPHIIVGTPGKIIRHLKDTPAFSLAKLKYLVIDEAHLLESNKHIDKQLEYITGKIPRNRTTLLFSDSMTDKVHAIQSMYLRNPVKIDESIEYPEQQQCHMSAEHKDCYLAYTLNKMGGKTSLVFVRACDLMLRLALTLRYFGFNVIPINVLMSQAKRLEALNLFKSGDCKILLCNEGASRGLDIPAVDMVINYDIPDNPKDYMHRVGWAAPSGVAISFVNPNEERWFEMIETHIGKKLSVYPAQNEEVLLLSSRVSEAKSLADKEKNESGWWRIGGYLGEEDVRKIERVYSTNYVKVYVDPELLETLKREHEVYHLPYPKKELISATENSENSADGDTVVIKTSDGVDYKVERVIAMQIQTKYGLAESGTEFKLSNVGSEALETAIKLLKELQANRKIYLGDFTDEQLKDLVIAVYHLGFSELQNALCQVIANRLQNKSKEYMLTFFGFQEEESELMEEDALGIRK* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g6009 591 SMART helicmild6 257 338 IPR001650 -
Mal1g6009 591 PANTHER RNA HELICASE 2 418 - -
Mal1g6009 591 Gene3D - 219 386 IPR027417 -
Mal1g6009 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 210 374 IPR001650 -
Mal1g6009 591 Pfam Helicase conserved C-terminal domain 234 332 IPR001650 -
Mal1g6009 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 355 IPR027417 -
Mal1g6009 591 SUPERFAMILY Skp1 dimerisation domain-like 529 582 IPR036296 GO:0006511
Mal1g6009 591 Pfam DEAD/DEAH box helicase 30 197 IPR011545 GO:0003676|GO:0005524
Mal1g6009 591 Gene3D - 1 214 IPR027417 -
Mal1g6009 591 PANTHER BNAC02G41920D PROTEIN 2 418 - -
Mal1g6009 591 CDD SF2_C_DEAD 226 344 - -
Mal1g6009 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 36 211 IPR014001 -
Mal1g6009 591 Gene3D Potassium Channel Kv1.1; Chain A 461 587 IPR011333 -
Mal1g6009 591 SMART ultradead3 24 224 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g6009 Mal-Chr1 138029100 138037169 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g6009 1 367 Eukaryotic Initiation Factors Gene Family AT3G19760 25.916 3.30e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g6009 K14777 - gmx:100775796 411.764