Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g6007 | ATGAGTCAGGCAAAGAGACTTGAAGCCTTGAATGTGTTCAAGTCTGGGAAGTGCAATATTCTCATTTGTAACGAGGGAGCTAGTAGGGGACTAGATATTCCAGCAGTAGATATGGTGATTAACTACGACATACCCAACGACCCCAGAGATTATATGCACCGTGTGGGATGGGCTGCTCCTTCAGGAGTTTCCATTTCTTTTGTGAACCCAAATGAGGAGAGATGGTTTGAAATGATAGAGACACATATAGGCAAGAGGCTACCCGTGTATCCGGCACAAAATGAGGAAGTACTTCTTTTGAGTAGCCGTGTTAGTGAGGCCAAAAGTTTAGCTGACCAGGTCCGTAAGATCGAAAGCGTGTATTCAAGGAAACATGTGAAGGTTTATGTAGATCCCGAATTGTTGGAGACACTGAAGCAGCAACATGAGAAAACTCAAGAATTTATCTCGGCGCCTGAAAACTCTGAAAATTCAGCTGATGGCGATACTGTTGTTATCAAAACAAATGACGGAGTAGCTCAAAAGGTTGAACGAGTCTTCGGGGTGCAGATTCTGACAAAGTATGGCCTTGCAGCATCCGGAACAGAATTTGAACTTTCCAATGTGGGAAGCAAAGCCCTAGAGACTGCCATTAGGCTCTTAAAAGAACTCCAAGCCAATCAGAAGATCGACGTGGGAGATTTTTCAAATGAGCAACTCAAAGATCTTGTCTTAGCGGTTTATCACCTCGGCTTCAGTGAGCTTCAAAATTTCCTATGTCAGGTCATTGCTGATAGATTACAAAATAAGAGTAAGGAATATATGCAGACATTTTTTGGATTTCAAGAGGAAGAGAGCAAGTTAAAGGAGGAGGATGCTTAG | 861 | 0.4286 | MSQAKRLEALNVFKSGKCNILICNEGASRGLDIPAVDMVINYDIPNDPRDYMHRVGWAAPSGVSISFVNPNEERWFEMIETHIGKRLPVYPAQNEEVLLLSSRVSEAKSLADQVRKIESVYSRKHVKVYVDPELLETLKQQHEKTQEFISAPENSENSADGDTVVIKTNDGVAQKVERVFGVQILTKYGLAASGTEFELSNVGSKALETAIRLLKELQANQKIDVGDFSNEQLKDLVLAVYHLGFSELQNFLCQVIADRLQNKSKEYMQTFFGFQEEESKLKEEDA* | 287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g6007 | 286 | PANTHER | RNA HELICASE | 1 | 113 | - | - | |
| Mal1g6007 | 286 | CDD | SF2_C_DEAD | 1 | 68 | - | - | |
| Mal1g6007 | 286 | Gene3D | - | 1 | 96 | IPR027417 | - | |
| Mal1g6007 | 286 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1 | 98 | IPR001650 | - | |
| Mal1g6007 | 286 | PANTHER | BNAC02G41920D PROTEIN | 1 | 113 | - | - | |
| Mal1g6007 | 286 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 93 | IPR027417 | - | |
| Mal1g6007 | 286 | Gene3D | Potassium Channel Kv1.1; Chain A | 161 | 286 | IPR011333 | - | |
| Mal1g6007 | 286 | Pfam | Helicase conserved C-terminal domain | 1 | 56 | IPR001650 | - | |
| Mal1g6007 | 286 | SUPERFAMILY | Skp1 dimerisation domain-like | 228 | 284 | IPR036296 | GO:0006511 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g6007 | Mal-Chr1 | 138006026 | 138010675 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal1g6007 | 1 | 91 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 34.043 | 5.10e-12 | 63.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g6007 | K14777 | - | csin:114273103 | 146.362 |