LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal1g5997	ATGGCTGAGGCCTTACTTGGTGTTGTGTTTCAGAACCTGACATCTCTGGTTCAAAAAGAATTTTCAACTCTATCTGGAGTCAAGTCAAAGGCTCAAAAGCTATCAGCCACGTTAGATTTGATTAACGTTGTTCTTGAAGACGCTGAAAAGAAACAAGTAACAGATCGCTCTATTAAAGTATGGCTACAGCAACTCAAAGATGCGGTGTATGTGCTTGATGATATCCTTGATGAATGTTCGATCAAATCCAGTCGACTTAAGGGTTTCAAACTAAAGAACGTCATGTTTCGACGTGACATAGGCAGTAGGTTGAAAGAGATTGCAAGCAGACTCAACCAAATTTCTGAAAGTAAGAACAAGTTTCTTCTAGGAGAAGGTGTTATTGTTGCGGAAAAACCAATTGAAGTGACTGAATGGCGACAAACCAGCTCCATTATTGATGAACCAAAAGTGTTTGGACGAGAAGACGATAAAGAGAAGATTGTTGAGTTTCTTCTCACCCAAGCGAGGGACTCTGACTTCCTTTCCGTCTATCCCATTGTTGGTTTAGGTGGTGTTGGAAAAACAACTCTCGCTCAATTGGTCTACAACGATGATAGGGTGAGTCGCAATTTCATTACAAAAATTTGGGTTTGTGTTTCAGAGGTTTTCTCAGTCAAGGGGATTTTGTGTTCCATTATAGAATCCATGACAAAACAGAAGTGTGATGCAATGGATTTTGATGTAATACAAAGAAAAGTGCAAGAAATGTTGCAAGGTAAAAGATGTTTGTTGGTTTTGGACGATGTGTGGAACAGAAGTCAAGAATTGGAATTTGGATTAAACCAAGAGAAATGGAATAAGTTGAAATATGTGTTGTCTTGTGGATCCAAAGGTACATCTGTTTTAGTGTCTACTCGTGGTATGGATGTTGCATCAATCATGGGAACATGCCCAACTCGTCCTTTGTCGGTTCTCTCTGATAATGAATGTTGGTTATTGTTTAAACAATATGCATTTGGACATGATAGAGAAGAGTGTGCTGAGCTTATGGCAATAGGCAAGGAGATAGTAAAAAAGTGTGGAGGATTGCCTCTTGCAGCACAAGCATTGGGGTGTCTAATGCGCTCAAGGAGTGAAGAAAAGGAATGGCTTGAAATTAAAGATTGCGAGCTTTGGGCTTTACCGGATGAGAATTCTATTTTGCCAGCTTTGAGGTTAAGCTACTTTCATTTATCGCCAACCTTAAAACAATGTTTCGCATTTTGTGCTATGTTTCCCAAAGATTCGAAAATCATGAAGAAAGAATTGATTCATCTTTGGATGGCTAATGAATTTATTTCATCTAGAAAAAATTTGGAGGTTGAAGATGTTGGCAACATGATTTGGAATGAATTGTGCCAAAAATCTTTCTTTCAAGACATCGATATAGATGATTATTCAAGTGACATTTCTTTCAAAATGCATGATCTCGTCCATGATCTTGCTCAATCAGTAGGGGGGCAAGAATGTATGGTTTTAGATAGTGCATACATGACTAACTTGTCAAAAAGCACACACCATATTAGTTTCGGCACTGATAATCCGGTATTATTAGAAGAGGATTCCTTCACAATAGTAGAATCATTGCGAACATTGTATCATCTAGAAAATTTTCGATTTTACTATAGAGGTTTCTTACCAGTAATGCACACTCTTCGGGTTTTAAGAATAAACACTCTAGAGTTATCATTACTCGGTAGTTTAACTCATTTGAGGTATTTGGAGCTTCACAATTTGTACATAAAAACCTTGCCCGACTCAATTTATAGCTTACAAAAATTGGAAATCTTGAAATTGAAAGTTTTTCCCAAACTGAGTTGTCTACCGAAACGCTTGTCTTGCTTACAAAATCTTAGACATTTAGTCATTGAAGATTGTCGTTCGTTGGATCGCATGTTTCCTCACATTGGAAAATTATCTTGCTTAAGAACATTAAATGTTTTTATGGTTTATTCAGAGAAAGGGCATAGCTTAGCGGAGTTACGTGATCTAAACTTAGGAGGAAAGCTGGAGATCAAAGGCTTACAAAATGTCGGTAGTTTATCCGAAGCTCAAGAAGCCAATTTGATGGGTAAAAAAGACCTCGATGAATTATGCTTGTCATGGAAGCGCGGTGATTCATCTATCAGGACCCCTATTATTAGTGATGATCAAGTACTTGAAGTGCTTCAACCTCACACAAATCTCAAGAGCTTGAATATATATTGTTACCAAGGAGTTTGCTTTCCAAATTGGATCGGAATTCTTAGTAATTTAGTTGCTCTTAGACTTGAGTATTGCAGGCTTTGTGAACGGCTTTCATCACTTGGTAAACTACCATCTCTAAAAAAACTTGAATTATACTTTGTGTCTGTGAAATACTTGGATGACGATGAATTTGGTATGGTGGATAGGATATTCCCATCTCTGGAGGTACTCATACTAGTAAAGTTACCAAACTTAGAGGGGCTGTTGAAAGTGGAAAGAGAGGAGATGTTTCCTTGTCTGTCTATTCTGAAAATCAATGGTTGCCCTAAACTTGAACTTCCGTGTCTTCCATCTGTTAAAGACCTCAATGTACATGGATGTAATAATGAGTTACTGAAGTCAATCTCTGGTTTTTATGGTCTTACCACCCTTTTCCTTCATGGTGGTGGAGGAATAACATCTTTTCCTAAGGAAATGTTTGGAAACCTCACTTGTCTTCAAACTCTAACTGTAACGGGTTTCCAAAATTTGAAGGAGCTACCAAATGAGCCCTTCAACCTAGCTTTGGAGCATCTCCAAATCTCTTTCTGCAATGAGCTTGAGTATTTACCAGAGAAAATATGGGGAGGTCTGCAATCACTTCAATCTATGGTGATTAGTAATTGTAGCAGATTAAAATATTTGCCAGACGGTATTAGACACCTCACTGCATTTGATTGGTTGACTATTCGCGGATGCCCAACATTGACGGAGCGATGCAAGGAGGGAACAGGGGAAGATTGGGACAAGATAGCGCATATTCCAAAACTAGAGATTTCCTAA	3030	0.3822	MAEALLGVVFQNLTSLVQKEFSTLSGVKSKAQKLSATLDLINVVLEDAEKKQVTDRSIKVWLQQLKDAVYVLDDILDECSIKSSRLKGFKLKNVMFRRDIGSRLKEIASRLNQISESKNKFLLGEGVIVAEKPIEVTEWRQTSSIIDEPKVFGREDDKEKIVEFLLTQARDSDFLSVYPIVGLGGVGKTTLAQLVYNDDRVSRNFITKIWVCVSEVFSVKGILCSIIESMTKQKCDAMDFDVIQRKVQEMLQGKRCLLVLDDVWNRSQELEFGLNQEKWNKLKYVLSCGSKGTSVLVSTRGMDVASIMGTCPTRPLSVLSDNECWLLFKQYAFGHDREECAELMAIGKEIVKKCGGLPLAAQALGCLMRSRSEEKEWLEIKDCELWALPDENSILPALRLSYFHLSPTLKQCFAFCAMFPKDSKIMKKELIHLWMANEFISSRKNLEVEDVGNMIWNELCQKSFFQDIDIDDYSSDISFKMHDLVHDLAQSVGGQECMVLDSAYMTNLSKSTHHISFGTDNPVLLEEDSFTIVESLRTLYHLENFRFYYRGFLPVMHTLRVLRINTLELSLLGSLTHLRYLELHNLYIKTLPDSIYSLQKLEILKLKVFPKLSCLPKRLSCLQNLRHLVIEDCRSLDRMFPHIGKLSCLRTLNVFMVYSEKGHSLAELRDLNLGGKLEIKGLQNVGSLSEAQEANLMGKKDLDELCLSWKRGDSSIRTPIISDDQVLEVLQPHTNLKSLNIYCYQGVCFPNWIGILSNLVALRLEYCRLCERLSSLGKLPSLKKLELYFVSVKYLDDDEFGMVDRIFPSLEVLILVKLPNLEGLLKVEREEMFPCLSILKINGCPKLELPCLPSVKDLNVHGCNNELLKSISGFYGLTTLFLHGGGGITSFPKEMFGNLTCLQTLTVTGFQNLKELPNEPFNLALEHLQISFCNELEYLPEKIWGGLQSLQSMVISNCSRLKYLPDGIRHLTAFDWLTIRGCPTLTERCKEGTGEDWDKIAHIPKLEIS*	1010

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal1g5997	1009	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	136	416	IPR027417	-
	Mal1g5997	1009	Pfam	Rx N-terminal domain	6	92	IPR041118	-
	Mal1g5997	1009	Gene3D	-	318	400	IPR042197	-
	Mal1g5997	1009	Gene3D	-	135	311	IPR027417	-
	Mal1g5997	1009	PANTHER	DISEASE RESISTANCE PROTEIN RP	24	963	IPR044974	GO:0006952
	Mal1g5997	1009	PANTHER	OS05G0414200 PROTEIN	24	963	-	-
	Mal1g5997	1009	CDD	RX-CC_like	2	116	IPR038005	-
	Mal1g5997	1009	Gene3D	-	401	492	IPR036388	-
	Mal1g5997	1009	Coils	Coil	31	51	-	-
	Mal1g5997	1009	Gene3D	-	6	116	-	-
	Mal1g5997	1009	SUPERFAMILY	L domain-like	465	1001	-	-
	Mal1g5997	1009	Gene3D	Ribonuclease Inhibitor	555	659	IPR032675	-
	Mal1g5997	1009	Gene3D	Ribonuclease Inhibitor	852	992	IPR032675	-
	Mal1g5997	1009	Gene3D	Ribonuclease Inhibitor	660	851	IPR032675	-
	Mal1g5997	1009	PRINTS	Disease resistance protein signature	354	368	-	-
	Mal1g5997	1009	PRINTS	Disease resistance protein signature	177	192	-	-
	Mal1g5997	1009	PRINTS	Disease resistance protein signature	945	961	-	-
	Mal1g5997	1009	PRINTS	Disease resistance protein signature	250	264	-	-
	Mal1g5997	1009	Pfam	NB-ARC domain	154	382	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal1g5997	Mal-Chr1	137933600	137936629	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal1g5997	180	654	WRKY Transcription Factor Family	AT5G45050	25.048	6.13e-10	61.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal1g5997	-		-	mtr:MTR_5g071220	1357.43