Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5884 ATGGAAGAAGTAAAAATTAAATCATTTACGGATCTGGGCTTATCTTTTGATTTGGTGAAAGCTTGTGAAAAAAAAGGGCGTTGGTATAATCCGCTTAAGATTCAGACAGAAGTGATTCCCCTTGCGCTACAAGGAAAAGATGATTTGATTGGAATTTCCCCACCGCGTTCTGGTAAATCTGCGGCTTTTGTTATTCCTATATCACACGCCCTTATAGAAGCCGGACCCAACCTAAACACTTTCTTTGCTTGTGTGCTGTCTCCCACAAGGGAACTTGCTATTCAAATTGGTGACTACTTTCAAGCTCTAGGTTCTCAGTTTGGTGTCAAGTGTGCTGTCCTTTTTGAAGCCACGGTCTTGGTACATCAATCCATTCAGATTTCAAAGCAACCTCATATTATTGTTGGGACCCCTGGACAAGTCTTTTATAACCTAAAACACACCCAAGGATTTGCTCTTGCTCTTGCTAGTTTAAAATACCTGGTAATAGATGAGGCACACCTGCTGTTGAATGATCACTTTGAGGAACAACTAAATGAGATTTTACGAATGATTCCTAGTGACAGGAGAACATTTCTTTTTTCATCTAAAATGACAGAGAAGGTCCATGCTATCCAAAGTACGTGTTTAAGGAATCCTGTGAAGATTGACGTATCTTCCAAATATTCTACTGTGGTCACACAGAACCAGCAGAGTTGCTTTATGCCAGAAAAACATAAGGATTACTACCTTGTATACGCTCTCATTGAAATGACTGGAAGAACATCAATAGTATTCACTCAGCGTTGTCGTTTAACGCTTCTTCTGGCTTTGATTCTTAAGAGTCTTGGTTTCAAAGCCATCCCAATTATTAGTCATATGAGTCAGGCAAAGAAACTTGGAGCCTTGAATGCGTTCAAGTCTGGGATGTACAATATTCTCCTTTGTAGTGAGGCAGCTAGTAGGGGACTAGACATTCCAGGGGTAGATGTGGTGATTAACTACAACATTCCCACAAATCCCAACGATTATATGCATCGTGTGGGATGGACTGCTCCTGTTAATGTTGCCATTTCCTTAGTGAACCCAAAGGAAGCGAGAACATTCAAAATGATAGAGAGACATATAGGCAAGAAGCTACCAGTGTATCCTGCACCATATGAGCAAGTTATGCATTTGGAAAGGAGTGTTAGTGAGGCCGAAAGATTTGCACAAATGGAAATGAAACAATCCTGTTGGAAAAGCGGAGGATATTTAGGAGAGGAGGAAGTCAAAAAGATCCCAGGTTTGCGTTTAAGGAATCATGTTCAGGATCCAGCTTCAATGCATTGCACATTATCTTAA 1323 0.4059 MEEVKIKSFTDLGLSFDLVKACEKKGRWYNPLKIQTEVIPLALQGKDDLIGISPPRSGKSAAFVIPISHALIEAGPNLNTFFACVLSPTRELAIQIGDYFQALGSQFGVKCAVLFEATVLVHQSIQISKQPHIIVGTPGQVFYNLKHTQGFALALASLKYLVIDEAHLLLNDHFEEQLNEILRMIPSDRRTFLFSSKMTEKVHAIQSTCLRNPVKIDVSSKYSTVVTQNQQSCFMPEKHKDYYLVYALIEMTGRTSIVFTQRCRLTLLLALILKSLGFKAIPIISHMSQAKKLGALNAFKSGMYNILLCSEAASRGLDIPGVDVVINYNIPTNPNDYMHRVGWTAPVNVAISLVNPKEARTFKMIERHIGKKLPVYPAPYEQVMHLERSVSEAERFAQMEMKQSCWKSGGYLGEEEVKKIPGLRLRNHVQDPASMHCTLS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5884 440 Gene3D - 228 397 IPR027417 -
Mal1g5884 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 216 IPR014001 -
Mal1g5884 440 Pfam DEAD/DEAH box helicase 33 202 IPR011545 GO:0003676|GO:0005524
Mal1g5884 440 PANTHER BNAC02G41920D PROTEIN 4 415 - -
Mal1g5884 440 SMART helicmild6 267 348 IPR001650 -
Mal1g5884 440 CDD SF2_C_DEAD 230 354 - -
Mal1g5884 440 SMART ultradead3 27 226 IPR014001 -
Mal1g5884 440 Gene3D - 2 219 IPR027417 -
Mal1g5884 440 PANTHER RNA HELICASE 4 415 - -
Mal1g5884 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 365 IPR027417 -
Mal1g5884 440 Pfam Helicase conserved C-terminal domain 246 343 IPR001650 -
Mal1g5884 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 244 384 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5884 Mal-Chr1 136511041 136517735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5884 6 377 Eukaryotic Initiation Factors Gene Family AT3G19760 24.474 1.58e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5884 K14777 - gmx:100775796 478.018