Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5845 ATGGGAGGAAAATACGTTGGTGGGTGTAGCAGATCTTGGGAAGAAGACATTTATTGGACCCATTTTCAATTCATCCATTTCACTCAGTTTCTTCGCACCAATGATTTTGCTCAACAGTTGGCACTTCCCAAAACATTTTCAAACAATGTCAAAAAGAAGCTTCCGGAAAATGTGATCCTAAAAGGTCCTGGTGGAGTGACATGGAATATAGGGCTGACAACTAAAGACGATACATTTTACTTCTCTCACGGCTGGCAACAATTTGTAAAAGATCACTCATTGAAAGAGAACGATTTCCTTGTCTTTAAGTACAATGGGGAATCGTTGTTTGAGGTTTTAATATTTGATGGTGAGAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTACGAAAATGTGGGCGTGCCGCTGCTACCACCCAAACTGAACAAGGGGGCGGGTGTTCTAGCAAGGGAAGGGACACAAACAATTCTGTTGACGAAGTCAATACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTTGCCTCTTAACAGTATCAAAGTGCCATTTGCTGTACCACTACCTTCTGAAACTACCAATGGAAAGACTTCCAATGCTGGTGTTGAATCTGCCTCCCCTGAGCAATTAGTGTCTGATGCAGTCACTGAGACTGAACCAACAGCTGTTCCCTCCCAAACAACTGGTAAACGGACAAGGAGGCCTGTTTATGCCGTTACGTCTGCCCCGAGTAAGAAGAGAGGAAGACCAGCAAAAATATCAAATTCTCATGAGAAAGCTCTTAATTGGGTGACTGATGCTGAGCCCGAATCTTCTCCAAAGGGTAGATCTGGGACACAGGAACTATATACCTCCAATAGAAGGCTCGTAACAAAAGAGGAGATTGAAAATACTCTTCAGTTGGCCCATGCAGCATGTACCGAGGATAGCTTGCTTGTAACTATGCGACCTTCACATGTATACAAGAGATTCTTCGTGTCATTCCCTAATAAGTGGATACTAAACCATCTTGCTCCATCATCTCAAGATGTGATATTACGCATGGGCAAGAATGAATGGCTTGGGAAATACTGCTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGATGGAAATATTTTGCGCTCGACAACAACCTTGAAGAGTTTGATGTGTGCTTGTTTAAACCAGCTGGTCATTTGCACGACATACTGATCTTAGAAATGAGCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCTGTGAATTCTCCAGGAAAGAAGAGGGGGGTGAATTCTCCAGGGAAGAAGAGGGCAGGTAAGAGAACACTGACCAATGCTGCCCAAACAGAACTCGAGTCCATTGAAGGTGCGTAA 1374 0.4294 MGGKYVGGCSRSWEEDIYWTHFQFIHFTQFLRTNDFAQQLALPKTFSNNVKKKLPENVILKGPGGVTWNIGLTTKDDTFYFSHGWQQFVKDHSLKENDFLVFKYNGESLFEVLIFDGESFCEKAASYFVRKCGRAAATTQTEQGGGCSSKGRDTNNSVDEVNTPSNGVDEGVSPEKSLPLNSIKVPFAVPLPSETTNGKTSNAGVESASPEQLVSDAVTETEPTAVPSQTTGKRTRRPVYAVTSAPSKKRGRPAKISNSHEKALNWVTDAEPESSPKGRSGTQELYTSNRRLVTKEEIENTLQLAHAACTEDSLLVTMRPSHVYKRFFVSFPNKWILNHLAPSSQDVILRMGKNEWLGKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAGHLHDILILEMSIFRVVEEITPLTAVNSPGKKRGVNSPGKKRAGKRTLTNAAQTELESIEGA* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5845 457 Pfam B3 DNA binding domain 30 116 IPR003340 GO:0003677
Mal1g5845 457 Pfam B3 DNA binding domain 316 396 IPR003340 GO:0003677
Mal1g5845 457 CDD B3_DNA 317 410 IPR003340 GO:0003677
Mal1g5845 457 Gene3D - 292 414 IPR015300 -
Mal1g5845 457 SUPERFAMILY DNA-binding pseudobarrel domain 315 396 IPR015300 -
Mal1g5845 457 SMART B3_2 27 118 IPR003340 GO:0003677
Mal1g5845 457 SMART B3_2 314 407 IPR003340 GO:0003677
Mal1g5845 457 CDD B3_DNA 26 116 IPR003340 GO:0003677
Mal1g5845 457 MobiDBLite consensus disorder prediction 191 257 - -
Mal1g5845 457 ProSiteProfiles B3 DNA-binding domain profile. 314 412 IPR003340 GO:0003677
Mal1g5845 457 MobiDBLite consensus disorder prediction 139 177 - -
Mal1g5845 457 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 275 420 - -
Mal1g5845 457 MobiDBLite consensus disorder prediction 139 170 - -
Mal1g5845 457 SUPERFAMILY DNA-binding pseudobarrel domain 22 116 IPR015300 -
Mal1g5845 457 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 275 420 IPR044837 -
Mal1g5845 457 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 201 IPR044837 -
Mal1g5845 457 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 10 201 - -
Mal1g5845 457 MobiDBLite consensus disorder prediction 193 237 - -
Mal1g5845 457 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
Mal1g5845 457 Gene3D - 20 121 IPR015300 -
Mal1g5845 457 MobiDBLite consensus disorder prediction 422 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5845 Mal-Chr1 136015359 136018582 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5845 13 410 REM Transcription Factor Family AT4G33280 35.840 1.86e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g5845 B3 2.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5845 - - mtr:MTR_1g021500 744.962