Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5843 ATGGGAAGTGGGAACAGATCATGGGAGGAAGACATTTACTGGACCCACTTTCAGTTCATCCATTTCACTCAATTTCTTCGCAACACTGATTTTCAGCAACAACTTGCACTTCCCAAAACATTTTCAGACAATTTAAAAAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGCTGTGTGGAATATAGGGCTGAAAACTAGAGATGATACTCTTTACTTCGTGGACGGTTGGCAACGATTCGTGAACGATCACTATTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCGCTCTTTGAGGTTTTAATCTTTCATGGTGATAGTCTCTGTGAGAAGGAAACTTCTTATTTTGTTCGAAAATGTGGGAATGCTCAAACTGAACAAGGGGGTAGAAAGGCAAAGGACCCAAAAAATTCTGTTGAAGAAGTCAATACTCCTTCTAATGGTGGTGTTGAATGTGGTTCATCTGACAAATTTCGGAAGCTTGACACTATAAGAACACCATTAGCTGTACCTTTCGAAAATACCAATGAAAAGACTTTTAATGCTGGTGTTGAGTCTGCTTCCACTGAGCAGTTCATGGCTGATGCAGTCACTATATCGGTTCCCTCCCAAACAACCGGCAAAAAGACCAAGAAGCCTGTTAATGAAGTTACGCCTGGCCAGACTAAGAAGCGGGGAAGACCAGCAAAATCAGCTACTTCTGCTGAGAGAGCAATTGATTGGGTGGCTTGTAGCAAGGAACACTCAGGGAGCAAAGAAAAAGATGTTGATGATCGTGAAATTGAGGGTGGAAGCTGA 819 0.4164 MGSGNRSWEEDIYWTHFQFIHFTQFLRNTDFQQQLALPKTFSDNLKKKLPENVTLKGPSGAVWNIGLKTRDDTLYFVDGWQRFVNDHYLKENDFLVFKYNGESLFEVLIFHGDSLCEKETSYFVRKCGNAQTEQGGRKAKDPKNSVEEVNTPSNGGVECGSSDKFRKLDTIRTPLAVPFENTNEKTFNAGVESASTEQFMADAVTISVPSQTTGKKTKKPVNEVTPGQTKKRGRPAKSATSAERAIDWVACSKEHSGSKEKDVDDREIEGGS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5843 272 CDD B3_DNA 21 110 IPR003340 GO:0003677
Mal1g5843 272 MobiDBLite consensus disorder prediction 210 224 - -
Mal1g5843 272 Pfam AT hook motif 229 240 IPR017956 GO:0003677
Mal1g5843 272 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 241 IPR044837 -
Mal1g5843 272 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
Mal1g5843 272 MobiDBLite consensus disorder prediction 248 272 - -
Mal1g5843 272 Gene3D - 15 116 IPR015300 -
Mal1g5843 272 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Mal1g5843 272 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 5 241 - -
Mal1g5843 272 MobiDBLite consensus disorder prediction 210 272 - -
Mal1g5843 272 Pfam B3 DNA binding domain 23 110 IPR003340 GO:0003677
Mal1g5843 272 SMART B3_2 22 113 IPR003340 GO:0003677
Mal1g5843 272 MobiDBLite consensus disorder prediction 133 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5843 Mal-Chr1 136004518 136008469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5843 8 135 REM Transcription Factor Family AT4G33280 55.814 6.78e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g5843 B3 1.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5843 - - mtr:MTR_1g021440 373.629