Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5842 ATGGGACAAAACAGTGGTGCAAGCAGCAGATCTTGGGAGGAAGATATCTACTGGACCCATTTTCAGTTCATCCATTTCACTCTATTTCTTCAAACTACAGATTTTAAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAATTGTGTGGAATATAGAGCTGACAACTAGAGATGATACTGTTTACTTCGTGGACGGTTGGCAACGATTCGTGAACGATCATTCTTTGAAAGACAGTGATTTCCTTGTCTTTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAACTTCTGTGAGAAAGCAGCTTCTTATTTTGTTCGAAAATGTGGACAAGCTCATAACGAACAAGGGGGTAACAAGGGAAAGAATTCAAACAATTCTGTTGAACAAGTCAATACTCCTTCTAATGGCGGTGTTGAATGTGCTTCACCTGAGAAATTCCGGCGTCTTACTAGTATAAGAACGCCATTAGCTGTAAATTTTGAAACTACAAATGGAAAGACTTCTAATGCTGTAGCTGTACCTTTTGAAACTACCAATGGAAAGACTTCTAATGCTGTTGTTGAATCTTCTTCCCCTGAGAAAGTCATGGCTGATGCACTCACTAAGACCACAACTACACAGTTTCCCTTCCAGCCAACCGGCAAAAGGACCAAGAAGCCTGTTAAAGAAGTTACGCCTGTCCAGACTAAGAAGCGAGGAAGACCACCAAAAGAAGCTAATTCTAGCGAGAGAGCACTTGATTTGAGGGCTTGTGACAAGGAACACTCAGAGGCAGCACTGTCAAGGTTATCGTCAGCAAAGAATGAGAAAAAGTTAGCTCAATCATTTACCTCGACTTTTCCATATTTTGTTAAAATAATCAAAACGTTCAATGTCGATGGTCCACGTATTCTGAATATTCCCCATCAATTTTCCATTGCACATCTTCCAAACGGCAAGATAAAGATTATTCTTCATAATTTGAAGGGAGAACAGTGGACTGCTAATTCTGTTCCTAGAAGTAGAGTGCATACAAGTCACACTCTATGTGGAGGATGGATGTCTTTTGTTCGTGCCAATAACATAAAGCTTGGAGATGTCTGCATTTTCGAACTTATAAATGACTGTGAATTACGTGTTCGCGTCGCTGAGGTTGGAGAAGATGGGCTAGTCTCCCAGGTTGGAAAGGAAGGTATTGATCATCAAGATGGGAATTGTGAAACTTAG 1275 0.4 MGQNSGASSRSWEEDIYWTHFQFIHFTLFLQTTDFKQQLALPKTFSDNLKKKLPENVTLKGPSGIVWNIELTTRDDTVYFVDGWQRFVNDHSLKDSDFLVFKYNGESHFEVLIFDGENFCEKAASYFVRKCGQAHNEQGGNKGKNSNNSVEQVNTPSNGGVECASPEKFRRLTSIRTPLAVNFETTNGKTSNAVAVPFETTNGKTSNAVVESSSPEKVMADALTKTTTTQFPFQPTGKRTKKPVKEVTPVQTKKRGRPPKEANSSERALDLRACDKEHSEAALSRLSSAKNEKKLAQSFTSTFPYFVKIIKTFNVDGPRILNIPHQFSIAHLPNGKIKIILHNLKGEQWTANSVPRSRVHTSHTLCGGWMSFVRANNIKLGDVCIFELINDCELRVRVAEVGEDGLVSQVGKEGIDHQDGNCET* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5842 424 Gene3D - 19 120 IPR015300 -
Mal1g5842 424 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Mal1g5842 424 SUPERFAMILY DNA-binding pseudobarrel domain 299 399 IPR015300 -
Mal1g5842 424 ProSiteProfiles B3 DNA-binding domain profile. 306 402 IPR003340 GO:0003677
Mal1g5842 424 MobiDBLite consensus disorder prediction 239 268 - -
Mal1g5842 424 Pfam B3 DNA binding domain 32 115 IPR003340 GO:0003677
Mal1g5842 424 Pfam B3 DNA binding domain 306 396 IPR003340 GO:0003677
Mal1g5842 424 SMART B3_2 26 117 IPR003340 GO:0003677
Mal1g5842 424 SMART B3_2 306 402 IPR003340 GO:0003677
Mal1g5842 424 MobiDBLite consensus disorder prediction 138 161 - -
Mal1g5842 424 CDD B3_DNA 304 398 IPR003340 GO:0003677
Mal1g5842 424 MobiDBLite consensus disorder prediction 136 163 - -
Mal1g5842 424 Gene3D - 287 402 IPR015300 -
Mal1g5842 424 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 9 412 - -
Mal1g5842 424 SUPERFAMILY DNA-binding pseudobarrel domain 21 115 IPR015300 -
Mal1g5842 424 MobiDBLite consensus disorder prediction 229 268 - -
Mal1g5842 424 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 412 IPR044837 -
Mal1g5842 424 CDD B3_DNA 25 115 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5842 Mal-Chr1 135984454 136001141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5842 12 390 REM Transcription Factor Family AT4G33280 29.381 1.42e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g5842 B3 2.6e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5842 - - mtr:MTR_1g021440 645.58