Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5841 ATGGGAGATGGAAGCAGATCATGGGAGGAAGACATTTACTGGAACCATTTCCAGTTCATCCATTTCACCCAGTTTCTTCGCAGCAATGATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCAGAAACTGTGACCCTTAAAGGTCCTAGTGGAGCTGTGTGGAATATAAGGCTGAAAACTAGAGATGATACTCTTTACTTTGTAGATGGTTGGAAGCAATTTGTGAAAGACCAATCTCTGAAAGAGAATGATTTCCTTGTATTCAAGTACAATGGTAAATCTCTCTTCGAGGTTTTAATCTTTCATGGAGACAGTTTCTGCGAGAAGGCAGCCTCTTATTTTGTCAGAAAATGTGGGAATGCTCAAACTGAACAAGAGGGTAGCAAGCCAAAGGACGCAAACAAGTCTGTTGAAGAAGTCACTACTGTTGTTAATGATGGTGTTGAGTCTGCTTCCCCTGAGCAGTTCATGGCTGATGCAGTCACTATAGCGGTTCCCTCCCAATCAACCGGCAAAAGGACCAACAAGCCTGTTAGTGAAGTTACGCCTGTCCAGACTAAGAAGCGAGGAAGACCACCAAAAGCAGCTAACTATTCTTTTGAGAGAGAAGCACATGATTATGATTTGGTGGCTTGTAACAAGGAACACTCAGAGGCATCCATCAGTGGGAAGGAAGATGAGAAAAAGACAGTCCAATCATTTACCTCCCCTTTTCCATATTTTGCTATAATAATGAAAGCCTGCAATATCAGTGGTTCACGTATTCTGAGACTCCCATATCATTTCTCTGCTGCACATCTCCCTGCCTGCAAAACAGAAGTTACGCTTCGCAACTCAAGAGGTGAAACTTGGACTGTGAACTCCATCCCAGGTGCTCTAGGGGGAGCAACACACACTTTTTATGGGGGATGGATGGGCTTTGTTCGTGATAATGGCATCAATTTTGGTGACAAATGCATTTTTGAGCTCGTTTCTGATTATGTGATGCAGGTTTATATATCAGGGGTTGGAAAAGAAGGTCTTGACCATCAAATTGGGAATGTGAAACCTAATAGCACCTAG 1089 0.4233 MGDGSRSWEEDIYWNHFQFIHFTQFLRSNDFQQQLALPKTFSDNLKKKLPETVTLKGPSGAVWNIRLKTRDDTLYFVDGWKQFVKDQSLKENDFLVFKYNGKSLFEVLIFHGDSFCEKAASYFVRKCGNAQTEQEGSKPKDANKSVEEVTTVVNDGVESASPEQFMADAVTIAVPSQSTGKRTNKPVSEVTPVQTKKRGRPPKAANYSFEREAHDYDLVACNKEHSEASISGKEDEKKTVQSFTSPFPYFAIIMKACNISGSRILRLPYHFSAAHLPACKTEVTLRNSRGETWTVNSIPGALGGATHTFYGGWMGFVRDNGINFGDKCIFELVSDYVMQVYISGVGKEGLDHQIGNVKPNST* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5841 362 CDD B3_DNA 21 110 IPR003340 GO:0003677
Mal1g5841 362 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Mal1g5841 362 SUPERFAMILY DNA-binding pseudobarrel domain 243 344 IPR015300 -
Mal1g5841 362 Gene3D - 230 345 IPR015300 -
Mal1g5841 362 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 5 357 - -
Mal1g5841 362 Pfam B3 DNA binding domain 22 109 IPR003340 GO:0003677
Mal1g5841 362 Pfam B3 DNA binding domain 254 335 IPR003340 GO:0003677
Mal1g5841 362 Gene3D - 15 116 IPR015300 -
Mal1g5841 362 SUPERFAMILY DNA-binding pseudobarrel domain 18 111 IPR015300 -
Mal1g5841 362 CDD B3_DNA 248 342 IPR003340 GO:0003677
Mal1g5841 362 ProSiteProfiles B3 DNA-binding domain profile. 250 346 IPR003340 GO:0003677
Mal1g5841 362 MobiDBLite consensus disorder prediction 176 203 - -
Mal1g5841 362 MobiDBLite consensus disorder prediction 176 191 - -
Mal1g5841 362 SMART B3_2 249 346 IPR003340 GO:0003677
Mal1g5841 362 SMART B3_2 22 113 IPR003340 GO:0003677
Mal1g5841 362 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 357 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5841 Mal-Chr1 135977884 135980644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5841 8 331 REM Transcription Factor Family AT4G33280 31.302 6.17e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g5841 B3 2.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5841 - - mtr:MTR_1g021435 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5841 1 135977884 135980644 Mal1g5841 1 135977884 135980644 ECH