Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5840 ATGGGAGGAGGAGGAGGAACACAAAACAGGTCTTGGGAGGAAGACATTTACTGGACCCATTTCCAATTCGTGCGTTTCACCCAATTTCTGAGCACCACCCATTTTCAACAACAACTTGCACTTCCCAAAACATTTTCAGACAATTTAAAGAACAAGTTGCCAGCAAATATGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGGATATAGGACTGACAACTAGAGATGATACAGTTTACTCCACGAGTGGTTGGCAACAATTCGTGAAAGATCACTCTTTGAAACAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAATCTTTCACGGAGAAAGCTTATGTGAGAAAGCAGCTTCTTATTTTGTTCTAGAATGTGGACAAGCTCATACTGAACAAGAGGGTAGCAAGGAAAAGGACACAAACACTTCTGTTGAAGAAGTCAATTCTCCTTCTAATGGTGATGTTGAATGCGGTTCGCCTGAAAAATCATGGGAGGAAAATATATACTGGACCCATTTCCAGTTTATCCATTTCACCCAATTTCTTCGCACTGATTTTGAACAGCAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCTGAAAATGTGACCATTAAAGGTCCTAGTGGAGTTGTGTGGAATGTAGGGCTGATAACTAGAGATGATACTTTTTACTTCGTGGACGGATGGCATCGATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCTCTCTTTGAGGTTTTAATCTTTGATGGAGATAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGTGGGAATGCTCAAACTGAACAAGGGGGTAGAAAGGCACAGGACACAAACAAGTCTGTTTCCCCTGAGCAGTTCATGGTTGATGCAGTCACTAAGACCACACCTGTTGCGGTTCCCTCCCAAGCAAACGGCAAAAGGACCAAGAAGAAGCCTGTTAATGAAGTTACGCCTGTCCAGACTAAGAAGCGAGGAAGACGACCAAAAGCAGAGGCAGCACTGTCAAAGTTATCATCAGGGCATGTTGAGAAAAAGATAGCCCAATCATTTACCTCCTCTTTTCCATATTTTGTTAAAATGATCAAAACGTTCAATGTCGATGGTCCACGTATTCTGAATGTACCCCATCAATTCTCGATGGCACATTTTCCAAACCGCAAGGTAAAGATTATTCTTCATAACTTGAAGGGAGAACACTGGACAGTTAATTCTGTTCCAACAACAAGAGTGAATGTAGATCACACTCTATGTGGAGGATGGGTGAATTTTGCTCGTGAAAACAACATAAAAGTTGGAGATGTCTGCATTTTCGAACTTATACATGAGTGTGAATTACGTGTTCGCGTCGCTGAAGTTGGAAATGATGGGCTAGACTTCTAG 1458 0.4081 MGGGGGTQNRSWEEDIYWTHFQFVRFTQFLSTTHFQQQLALPKTFSDNLKNKLPANMTLKGPSGVVWDIGLTTRDDTVYSTSGWQQFVKDHSLKQNDFLVFKYNGESLFEVLIFHGESLCEKAASYFVLECGQAHTEQEGSKEKDTNTSVEEVNSPSNGDVECGSPEKSWEENIYWTHFQFIHFTQFLRTDFEQQLALPKTFSDNLKKKLPENVTIKGPSGVVWNVGLITRDDTFYFVDGWHRFVKDHSLKENDFLVFKYNGESLFEVLIFDGDSFCEKAASYFVGKCGNAQTEQGGRKAQDTNKSVSPEQFMVDAVTKTTPVAVPSQANGKRTKKKPVNEVTPVQTKKRGRRPKAEAALSKLSSGHVEKKIAQSFTSSFPYFVKMIKTFNVDGPRILNVPHQFSMAHFPNRKVKIILHNLKGEHWTVNSVPTTRVNVDHTLCGGWVNFARENNIKVGDVCIFELIHECELRVRVAEVGNDGLDF* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5840 485 CDD B3_DNA 25 114 IPR003340 GO:0003677
Mal1g5840 485 SMART B3_2 383 479 IPR003340 GO:0003677
Mal1g5840 485 SMART B3_2 26 117 IPR003340 GO:0003677
Mal1g5840 485 SMART B3_2 184 274 IPR003340 GO:0003677
Mal1g5840 485 MobiDBLite consensus disorder prediction 326 355 - -
Mal1g5840 485 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 167 483 - -
Mal1g5840 485 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 8 168 IPR044837 -
Mal1g5840 485 MobiDBLite consensus disorder prediction 334 355 - -
Mal1g5840 485 Pfam B3 DNA binding domain 384 474 IPR003340 GO:0003677
Mal1g5840 485 Pfam B3 DNA binding domain 193 272 IPR003340 GO:0003677
Mal1g5840 485 Pfam B3 DNA binding domain 31 114 IPR003340 GO:0003677
Mal1g5840 485 SUPERFAMILY DNA-binding pseudobarrel domain 22 115 IPR015300 -
Mal1g5840 485 ProSiteProfiles B3 DNA-binding domain profile. 181 274 IPR003340 GO:0003677
Mal1g5840 485 ProSiteProfiles B3 DNA-binding domain profile. 383 479 IPR003340 GO:0003677
Mal1g5840 485 CDD B3_DNA 381 475 IPR003340 GO:0003677
Mal1g5840 485 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 8 168 - -
Mal1g5840 485 Gene3D - 366 479 IPR015300 -
Mal1g5840 485 MobiDBLite consensus disorder prediction 137 165 - -
Mal1g5840 485 SUPERFAMILY DNA-binding pseudobarrel domain 376 476 IPR015300 -
Mal1g5840 485 CDD B3_DNA 183 272 IPR003340 GO:0003677
Mal1g5840 485 Gene3D - 177 277 IPR015300 -
Mal1g5840 485 Gene3D - 19 120 IPR015300 -
Mal1g5840 485 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Mal1g5840 485 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 167 483 IPR044837 -
Mal1g5840 485 SUPERFAMILY DNA-binding pseudobarrel domain 180 273 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5840 Mal-Chr1 135965710 135971803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5840 170 322 REM Transcription Factor Family AT4G33280 51.948 1.38e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g5840 B3 2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5840 - - mtr:MTR_1g021360 873.618