Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5839 ATGGGAGATGGAAGAAGAAGATCATGGGAAGAAGAGATTTACTGGAACCATTTTCAGTTCATACATTTCACCCAATTTCTCAGCACCACTCATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAGAACAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGCTGTGTGGAATATAGGGCTGACAACTAGAGATGATACTGTTTACTTTGTAGACGGTTGGCAGCAATTTGTGAAAGATCAATCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTATAATGGTGAATCTCTCTTTGAAGTTTTAATCTTCAATGGAGAAAGCTTCTGTGAGAAAGCAGCTTCTTATTTTGTTCGAAAATGTGGACAAGCTCATACTGAAGAAGAGGGTAACAAAGGAAAGAATTTAAACAATTTTTTTGAAGAAGTCAATACTCTTTCTAATGGTGGTGTTGAATGTGCTTCACCTGAGATATTTCGGCCTCTTAACAGTATAAGAACGCCATTAGCTGTTACTTTTGAAACTACCAACGGAAAGACTTTTAATGCTGGTGTTGAATCTGCTTCCCCTGAGAAAGTCATGGCTGATGCACTCACTAAGACCACAACTATACAGTTTCCCTTCCAGCCAACCAGGACTAAGAAGAAGCCTGTTAAAGAAGTTACGCCTGTCCAGACTAAGAAGCGAGGAAGACCACCAAAAGAAGCTAATTCTAGCGAGAGAGCACTTGACTTGAGGGCTTGTAACAAGGAACACTCAGAGGCAGCACTGTCAAAGTTATCAAGAAAGGATGAGAAAAAGATAGCACAATCAGTTACCTCCTCTTTTCCATATTTTGTTAAAATAATCAAAACGTTCAATGTCGTTGGTCCACGTATTCTGCATGTACCCAGTGAATTTTCAATGGCACATCTTCCAAAAGGAAATATACAAACTATTCTTCATAATTTGAAGGGAGAACGTTGGACTGTTAATGCTGTTGCTATAGCTAAAATACAGAGTAAAACAAGGCACGTTCTATCTGCAGGATGGATGGCTTTTGTTCATGCCAATGGCATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATTAATGAGTGTAAATTACGTGTTCGCATCTCTGAGGTTGGAAAGGAAGGTCTTGACCATCAAATTGAGCATGCGAAACTTAATAGCATGTAG 1203 0.3865 MGDGRRRSWEEEIYWNHFQFIHFTQFLSTTHFQQQLALPKTFSDNLKNKLPENVTLKGPSGAVWNIGLTTRDDTVYFVDGWQQFVKDQSLKENDFLVFKYNGESLFEVLIFNGESFCEKAASYFVRKCGQAHTEEEGNKGKNLNNFFEEVNTLSNGGVECASPEIFRPLNSIRTPLAVTFETTNGKTFNAGVESASPEKVMADALTKTTTIQFPFQPTRTKKKPVKEVTPVQTKKRGRPPKEANSSERALDLRACNKEHSEAALSKLSRKDEKKIAQSVTSSFPYFVKIIKTFNVVGPRILHVPSEFSMAHLPKGNIQTILHNLKGERWTVNAVAIAKIQSKTRHVLSAGWMAFVHANGIKVGDVCIFELINECKLRVRISEVGKEGLDHQIEHAKLNSM* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5839 400 ProSiteProfiles B3 DNA-binding domain profile. 286 384 IPR003340 GO:0003677
Mal1g5839 400 MobiDBLite consensus disorder prediction 220 250 - -
Mal1g5839 400 Pfam B3 DNA binding domain 28 111 IPR003340 GO:0003677
Mal1g5839 400 Pfam B3 DNA binding domain 286 380 IPR003340 GO:0003677
Mal1g5839 400 MobiDBLite consensus disorder prediction 217 250 - -
Mal1g5839 400 CDD B3_DNA 22 112 IPR003340 GO:0003677
Mal1g5839 400 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Mal1g5839 400 Gene3D - 265 384 IPR015300 -
Mal1g5839 400 SUPERFAMILY DNA-binding pseudobarrel domain 19 112 IPR015300 -
Mal1g5839 400 SMART B3_2 23 114 IPR003340 GO:0003677
Mal1g5839 400 SMART B3_2 286 384 IPR003340 GO:0003677
Mal1g5839 400 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 6 395 - -
Mal1g5839 400 CDD B3_DNA 284 380 IPR003340 GO:0003677
Mal1g5839 400 SUPERFAMILY DNA-binding pseudobarrel domain 280 381 IPR015300 -
Mal1g5839 400 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 395 IPR044837 -
Mal1g5839 400 Gene3D - 16 117 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5839 Mal-Chr1 135959546 135962899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5839 9 372 REM Transcription Factor Family AT4G33280 30.831 1.38e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g5839 B3 4.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5839 - - mtr:MTR_1g021440 533.487