Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5838 ATGGGAGAAGGAAGAATACAAAACAATGGTGGGTGCAGCAAATCTTGGGAGGAAGATATTTATTGGACCCATTTCCAATTCATCCATTTCTCACAATTTCTTCGCACCAATGATTTTCAACAACAACTTGCCCTTCCTAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTCTGTGGAATATAGGGCTGACAACTAGAAATGATACTGTTTACTTCGTGGATGGTTGGCAACGATTCGTGAAAGACCACTCTTTGAAACAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTCTGTGAGAAAGCAGCTTCTTATTTTGTTCTTGAATGTGGACAAGCTCATACTGAACAAGAGCGTAACAAAGGAAAGAATTCAAACAATTCTGTTGAAGAAGTCAATACTCCTTCTAATGATGGTGTTAAATCTGCTTCCCCTGAGAAAGTCACGGCTGACGCAATCAGAATCACCAAAACCACATCTTTTCCGCTTCCCATCCAACCAACCGGTGGTTTTAAATATTCTTCCCTTGAGAAATTCACGGCTGACGCAGTCAGAATCACCAAAACCCCGCTTCCCATCCTGTTTCCCACCCAACCAACCAGTGGTTTTAAATCTGCTTCCCCTGAGAAAGTCACTGCTGACGCAGTCAGAATCACCAAAACCCCGCTTCCCATCCATTTTCCCATCACACCAACCGGCAAAAGGACCAAGAAGCCTGTTAAAGAAGTTACGCCTGTCCAGACTAAGAAGCGAGGAAGACCACCAAAAGAAGCTAATTCTTGGCAGAGAGCGTTTAACAAGGAACACACAGAGGCAGCACTGTCAAAGTTTTCAAGAAAAGAGGAGGAAAAGATAGCACAATCATTTACCTCCTCTTTTCCATATTTTGTTAAAATAATAAAAACGTTCCATGTCGGTGGTTCATGTATTCTGAATGTACCCTATCAATTTTCTCTGGCACATCTTCCTAAGGGCAAGATAAAAATTATTCTTCTGAATATGAAGGGAGAACATTGGACTGTTAATTCTTTTCCTAGAGCTAAATCGGATACAAGTCACATTCTATGTGGAGGATGGATGGCTTTTGTTCATGCCAATAACATTAAGGTTGGAGATGTCTGCATTTTTGAACTTATTAATGACTGTGAATTACGTGTTCGCATTGCTGAGGTTGGAAAGGAAGGTCTTGACCATCAAAATGAGCATGTGAAACTTATTAGCATGTAG 1302 0.404 MGEGRIQNNGGCSKSWEEDIYWTHFQFIHFSQFLRTNDFQQQLALPKTFSDNLKKKLPENVTLKGPSGVLWNIGLTTRNDTVYFVDGWQRFVKDHSLKQNDFLVFKYNGESLFEVLIFDGESFCEKAASYFVLECGQAHTEQERNKGKNSNNSVEEVNTPSNDGVKSASPEKVTADAIRITKTTSFPLPIQPTGGFKYSSLEKFTADAVRITKTPLPILFPTQPTSGFKSASPEKVTADAVRITKTPLPIHFPITPTGKRTKKPVKEVTPVQTKKRGRPPKEANSWQRAFNKEHTEAALSKFSRKEEEKIAQSFTSSFPYFVKIIKTFHVGGSCILNVPYQFSLAHLPKGKIKIILLNMKGEHWTVNSFPRAKSDTSHILCGGWMAFVHANNIKVGDVCIFELINDCELRVRIAEVGKEGLDHQNEHVKLISM* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5838 433 Pfam B3 DNA binding domain 37 119 IPR003340 GO:0003677
Mal1g5838 433 Pfam B3 DNA binding domain 321 413 IPR003340 GO:0003677
Mal1g5838 433 CDD B3_DNA 319 413 IPR003340 GO:0003677
Mal1g5838 433 SUPERFAMILY DNA-binding pseudobarrel domain 316 414 IPR015300 -
Mal1g5838 433 Gene3D - 299 417 IPR015300 -
Mal1g5838 433 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 13 427 - -
Mal1g5838 433 MobiDBLite consensus disorder prediction 260 282 - -
Mal1g5838 433 MobiDBLite consensus disorder prediction 249 284 - -
Mal1g5838 433 Gene3D - 23 124 IPR015300 -
Mal1g5838 433 MobiDBLite consensus disorder prediction 141 171 - -
Mal1g5838 433 ProSiteProfiles B3 DNA-binding domain profile. 28 121 IPR003340 GO:0003677
Mal1g5838 433 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 427 IPR044837 -
Mal1g5838 433 SUPERFAMILY DNA-binding pseudobarrel domain 25 119 IPR015300 -
Mal1g5838 433 SMART B3_2 30 121 IPR003340 GO:0003677
Mal1g5838 433 SMART B3_2 321 417 IPR003340 GO:0003677
Mal1g5838 433 MobiDBLite consensus disorder prediction 151 168 - -
Mal1g5838 433 ProSiteProfiles B3 DNA-binding domain profile. 321 417 IPR003340 GO:0003677
Mal1g5838 433 CDD B3_DNA 29 119 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5838 Mal-Chr1 135953760 135957793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5838 7 405 REM Transcription Factor Family AT4G33280 32.090 5.79e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g5838 B3 2.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5838 - - mtr:MTR_1g021440 521.161