Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5836 ATGGGTTGTGAGTGTAAGGGAAAGTTGTATGTGAGAAAGCCTCACTTCTATCAGGTGTTTAACCCTTCTTCCAGCTCTCAATCTCTGAGAATTCCAGATGGTTTTGTCCATCAAATGGAGGGCACGACATGCGGATTAGTTTCATTAACTGGTCCTAGTGGAAATACTTGGCAAGTTCGGTTAGTTGAACAGGACAATCATCTATTCTTCCATCATGGATGGTCAACATTTGTAGGAGATCATCATTTACAACATGGCGACCTTTTGGTTTTCAGATATGAGGATCACTTGCATTTCACCGTGCAAGTATTTGGTGAGAATGCATGCGAGAAAGAAGCAGCATTTCATTCTGAGTGCAATCTAAATTCATTCAACTTCGATGATATTGAAGGACAGAAAAGTGATGCTGAGACGATTTCTTCTTTGGATGTTGTTCGAGATGTTCAGAAGAAAATGAGGTACGGCACCATTGAGAACCAGGAGCCTGAGCTGGCTATTGGTGGTAAAGGTCTATCCAATTATGAGGTAGTTAAACCAATTAGTATGGTCAGAGAAATTGAAGAAACCTGCAAAGAATGTTCAGCTAGTGCCGTCCATGTTCCTTTTCAAACAGGAAATAGTAATGAAGCTGAAGAGGCAGGAAGCCTGTATAGAAGTGGGAAGGAAGATGACCATGATATTCTCACCGGAGCTTCACTGTCAAAGTTATCAGCACATGATGAGAAAAAGATAGCCCAATCATTTACCTCATCTTTCCCATATTTTGTTAAAATAATTAAAACCTTCAATGTCAGTGGATCATATACTCTGAATGTTCCATATCAATTTTCGATGGCACATCTTCCAAACTGCAAGATACAGATTATTCTTCATAATTTGAAGGGAGAGCACTGGACTGTTAATTCTGTTCCAACAACTAGAGTGCATACAAGTCACACTCTATGTGGAGGATGGATGGCTTTTGTTCGTGGCAATAGCATAAAAGTCGGGGATGTCTGCATTTTTGAGCTTATACGTGAGTGTGAGTTACGTGTTCGCATCGCTGAGGTTGGAAAAGATGGGCTAGACTGCCAGGTTGGAAAATTAGCTTGTAGTATGCTTAGTGCAAGACATGATGTCGCTAGCCATAAGACTTCCAGATATATGCCGAAGAAACTTAAAGTTAGCTCAAAGTGCAGATTGAAGGTTGATCTATCAGACAAAATGTTGTCAAAGATTGGTCAAGAAGCTGTTTTATCCGGTAGAGCTTCAACAACTTCAAAGAAGATGGGGCTTTCCCCCAAGTCGAAAGCTGCTCATAAAAAGTCGGCTGTACCGAGGAAACATTGTGTTGAAGATGAACTAAGCTCCCAGGCTAAAGCTGGTATGAGAATGTTGTTTGCACTCGACGAACAAAGAGTAGCTGAAGCTTTTACTTCCCCATTTCCTAATTTTGTGAAAATCATGAAGAAGTTCAATGTTAGTGGATCATACACTTTGAAAATCCCATATCAATTCTCTGCTGCACATCTCCCCGCCTACAAAACAGAAGTTACGCTTCGCAATTCAAGAGGAAAATGTTGGATTGTAAACTCCGTCCCAGATGCCAAAGGGAGAACAATCCACACCTTTTGTGGGGGATGGATCGCCTTTGTTCGTGATAATGACATCAATTTTGGTGACACATGCATTTTTGAGCTCGTTTCTCATTACGTAATGCAGGTTCATATATCTGGGGTTGGAAAGGAAGGTCTTGACCATCAAAATGGGCTTGTGAAACTTAATAGCATGTAG 1773 0.4089 MGCECKGKLYVRKPHFYQVFNPSSSSQSLRIPDGFVHQMEGTTCGLVSLTGPSGNTWQVRLVEQDNHLFFHHGWSTFVGDHHLQHGDLLVFRYEDHLHFTVQVFGENACEKEAAFHSECNLNSFNFDDIEGQKSDAETISSLDVVRDVQKKMRYGTIENQEPELAIGGKGLSNYEVVKPISMVREIEETCKECSASAVHVPFQTGNSNEAEEAGSLYRSGKEDDHDILTGASLSKLSAHDEKKIAQSFTSSFPYFVKIIKTFNVSGSYTLNVPYQFSMAHLPNCKIQIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNSIKVGDVCIFELIRECELRVRIAEVGKDGLDCQVGKLACSMLSARHDVASHKTSRYMPKKLKVSSKCRLKVDLSDKMLSKIGQEAVLSGRASTTSKKMGLSPKSKAAHKKSAVPRKHCVEDELSSQAKAGMRMLFALDEQRVAEAFTSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEVTLRNSRGKCWIVNSVPDAKGRTIHTFCGGWIAFVRDNDINFGDTCIFELVSHYVMQVHISGVGKEGLDHQNGLVKLNSM* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5836 590 SMART B3_2 255 351 IPR003340 GO:0003677
Mal1g5836 590 SMART B3_2 478 576 IPR003340 GO:0003677
Mal1g5836 590 SMART B3_2 16 107 IPR003340 GO:0003677
Mal1g5836 590 Gene3D - 236 351 IPR015300 -
Mal1g5836 590 Gene3D - 463 573 IPR015300 -
Mal1g5836 590 CDD B3_DNA 476 570 IPR003340 GO:0003677
Mal1g5836 590 CDD B3_DNA 14 104 IPR003340 GO:0003677
Mal1g5836 590 Pfam B3 DNA binding domain 21 104 IPR003340 GO:0003677
Mal1g5836 590 Pfam B3 DNA binding domain 255 347 IPR003340 GO:0003677
Mal1g5836 590 Pfam B3 DNA binding domain 478 563 IPR003340 GO:0003677
Mal1g5836 590 Gene3D - 9 109 IPR015300 -
Mal1g5836 590 ProSiteProfiles B3 DNA-binding domain profile. 478 574 IPR003340 GO:0003677
Mal1g5836 590 CDD B3_DNA 253 347 IPR003340 GO:0003677
Mal1g5836 590 SUPERFAMILY DNA-binding pseudobarrel domain 471 572 IPR015300 -
Mal1g5836 590 ProSiteProfiles B3 DNA-binding domain profile. 255 351 IPR003340 GO:0003677
Mal1g5836 590 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 453 585 - -
Mal1g5836 590 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 453 - -
Mal1g5836 590 PANTHER B3 DOMAIN-CONTAINING 1 453 - -
Mal1g5836 590 PANTHER B3 DOMAIN-CONTAINING 453 585 - -
Mal1g5836 590 SUPERFAMILY DNA-binding pseudobarrel domain 248 348 IPR015300 -
Mal1g5836 590 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Mal1g5836 590 SUPERFAMILY DNA-binding pseudobarrel domain 12 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5836 Mal-Chr1 135933698 135937830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5836 13 347 B3 DNA Binding Superfamily AT3G18990 24.438 1.56e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g5836 B3 1.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5836 - - gmx:100814386 874.004