Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5834 ATGAGTACCACTTCAAGCGGAGATGATGGTGATCACAAAACAGACATATTTAGAGACATGAGTAGCGCTTCAAGCGGCGACGATGGTGATCACAAAGCAGGCATATTGAGAGTTATGAGCAGCGCTTCAAGCGGCGATGATGGTGATTACAAAACTCAAAAGCGTAATAGGTCATCATCCTCAAGCGAGGATGATGATGGCAGAAGGCTAAAGTATCGGTCAATACTATCAGCTGATCAAGAAACCGATGAAGGAGATAACACCGGAGAAGAAGGAGGAGGAGGAGGAGAAGGAAGTCTAAAGAAAGGTCCATGGACAGCGGCAGAGGATGAAATTTTGGTTGCTCATGTGAAAAAGTATGGAGAGGGAAATTGGAATGCAGTCCAGAAGTGTACCGGACTTGCTCGCTGTGGGAAAAGTTGTCGTCTACGATGGGCAAATCATTTGAGACCTGATCTCAGAAAAGGTGCAATTACTCCTGAAGAAGAACGCCGAATCCTTGAATTACACCTTAGGATTGGAAATAAATGGGCTCAAATGGCTGCACTGTTGCCTGGACGTACAGATAATGAGATAAAGAACTTTTGGAACACAAGATTAAAGAAACGGAATCGAGCAAAGTTACCTATCTACCCTGCAGATATATCATCCGGATGTCCGTTGAATGGCAATCAAGAAAATGCCGACATGCTGACAAAAGAAGCAAGCCAGCGTGATGAAACAGAGGACTCAAAGGTACCTGAGGTGGAATTTAAAGATTACAAACTCAACACAGATATATTTCCACCATGTTTTGATAAGCTGATAGGTAGCTTGGTTGAACAAGATTCAGATTTGTCACATAACACCATGTTCATGTGTCCCTCAAAGCGCCCTTGGAAGTCCGATATGATGTACCATAATTCGTACGGTTGTAGAAGTAGTCCTGCTGCCCCAGCAGTATTTGATCAGTTCGGCAAATATTCTATGTTGCCTTCTCCATGTGATCCGAATCTTTACACCAACAATCAGTTTCATGGATATGATCCGAATCTGGTCACACCAAAAATGTCTTCTTTTGAGCCCATACATAGGTCCATAAAGTTGGAGCCCCCTTCACACCAATATTCACACCCTGGAGATATTGGCTGGGTCGACATAACTCCATCGCCAATTGAGCCTGATCAGTCAGTTCCAATTTCTCCAGAGATCAGTCGTTTTCTTCCGTACAATCACCCTATTGTTAGGGAACAATTTTCTCAGTCAGTTTATGAGGCTGCGCGCTCAATTGATGGGCCCAACTCAGCTGAAACCACTCAGGATCATGATATTAACCATGATGCATTTAATCAGATCCCAGCTTATTTTTCTTCTGAGAATGATAATGAGAATCAATTAGATTTTGCTCATCCATTTGATGTGCTTGACTACACTGGGCATAGAGAGTATAAACAATGA 1437 0.4294 MSTTSSGDDGDHKTDIFRDMSSASSGDDGDHKAGILRVMSSASSGDDGDYKTQKRNRSSSSSEDDDGRRLKYRSILSADQETDEGDNTGEEGGGGGEGSLKKGPWTAAEDEILVAHVKKYGEGNWNAVQKCTGLARCGKSCRLRWANHLRPDLRKGAITPEEERRILELHLRIGNKWAQMAALLPGRTDNEIKNFWNTRLKKRNRAKLPIYPADISSGCPLNGNQENADMLTKEASQRDETEDSKVPEVEFKDYKLNTDIFPPCFDKLIGSLVEQDSDLSHNTMFMCPSKRPWKSDMMYHNSYGCRSSPAAPAVFDQFGKYSMLPSPCDPNLYTNNQFHGYDPNLVTPKMSSFEPIHRSIKLEPPSHQYSHPGDIGWVDITPSPIEPDQSVPISPEISRFLPYNHPIVREQFSQSVYEAARSIDGPNSAETTQDHDINHDAFNQIPAYFSSENDNENQLDFAHPFDVLDYTGHREYKQ* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5834 478 MobiDBLite consensus disorder prediction 8 34 - -
Mal1g5834 478 CDD SANT 104 149 IPR001005 -
Mal1g5834 478 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 81 393 - -
Mal1g5834 478 ProSiteProfiles Myb-like domain profile. 97 149 IPR001005 -
Mal1g5834 478 ProSiteProfiles Myb-like domain profile. 150 200 IPR001005 -
Mal1g5834 478 CDD SANT 159 200 IPR001005 -
Mal1g5834 478 SMART sant 154 202 IPR001005 -
Mal1g5834 478 SMART sant 101 151 IPR001005 -
Mal1g5834 478 Gene3D - 157 227 - -
Mal1g5834 478 Pfam Myb-like DNA-binding domain 105 165 - -
Mal1g5834 478 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 81 393 - -
Mal1g5834 478 SUPERFAMILY Homeodomain-like 100 196 IPR009057 -
Mal1g5834 478 MobiDBLite consensus disorder prediction 48 80 - -
Mal1g5834 478 Gene3D - 101 154 - -
Mal1g5834 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 153 IPR017930 -
Mal1g5834 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 204 IPR017930 -
Mal1g5834 478 MobiDBLite consensus disorder prediction 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5834 Mal-Chr1 135911184 135913900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5834 70 370 MYB Transcription Factor Family AT5G06100 41.231 4.33e-64 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal1g5834 Myb_DNA-bind_6 8.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5834 K09422 - gmx:100800658 300.441