LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal1g5820	ATGAGTTCAAGGTTACCAAAAGTACATTTGTGGTCTTTGATTTTATTAGTGTGCCACTTTGCAATCTCATGCAAAGCAAACCAACAAAGTGAATACCTCTACAAGTTTATTCAATCAAAGAGGTTTCAACAAAAGCCTTCTTCACATGGAGAAGCTTATTATTCAAGTGCTATTGTTGATGAACATGTTTCAAAGGTAAATGTTGTTGAACAACAATTAAGGTTGATGGAAGCTGATAAGGTGAAGTCTTTGCCTGGACAACCAAAAGGGGTGGATTTTGATCAATATGCTGGCTATGTAACTGTGGATGCAAAAGCAGGGAGAGAATTATTCTACTACTTTGTGGAATCACCTTTAAATTCTTCCACAAAGCCTCTTGTTCTATGGTTGAATGGAGGACCTGGATGCTCTTCATTTGGGTATGGAGCCATGCAAGAATTAGGACCTTTTAGAGTCAATAGTGATGGAACCACACTTTCCCTTAATAAAGATGCATGGAACATTGTGGCAAATGTTATCTTCCTAGAGTCCCCAGCAGGAGTTGGATTTTCTTATTCAAAAAAATCCTCTAACATTGGTGACAATAGCACAGCCAAAGATTCTTACACCTTTCTTCTAAACTGGCTTGAGAGATTTCCACAGTATAAGACTAGAGACTTTTTCATAGCTGGTGAAAGTTATGGTGGCCATTATGTTCCTCAGCTAGCTCACCTTATTCTCTCAAATAATAAGAAAATGAAAAATCACACAGTTATTAATTTGAAAGGCATCGCGGTTGGGAACGGTTGGATAGATGACAATTTGTGTACAAAGGGAATGTATGATTATTTCTGGATGGCTGGTCTAAACTCTGATGAAACACATGAAGGAATTCAAAAACTTTGTGACTTTGGGAACTTCAACGTAACAAATGAATGCAACTTATATCAAAGTAGAGCAAATGATGAGCTTGGAAATATTGACATTTACAACATATATGCCCCACTTTGTAATTCATCTGCAACAAAACCTAGTTACTCTGGCAGTGATTTTGACCCTTGTTCTGAAGATTATACCAATGCCTACTTAAATCTACCTGAAGTTCAAGAGGCTCTTCATGCTAAAGCCACAAATTGGTCTTCTTGCAGTGAGCTGAGTTGGACAGATAGTCCAGCAAGTATTCTACCAACTATAAATAGATTAATATCAAGTGGTATAAGCATTTGGATATACAGTGGTGATATAGATGGCCGTGTCCCCATAACCTCAACAAAGTATTCAATAAATTCCTTAAAACTACCTGTACATACAGCTTGGCGTCCATGGTACACTGGCAAAGAGGTTGGAGGATATGTGATTGGTTACAAAGGGCTCACACTTGTTACTGTAAGAGGAGCTGGGCACATGGTTCCAAGTTATCAACCACATCGAGCAGTAGCTATGATCTCATCATTCCTTATTGGAAAACTTCCTCCTCAATTAAACTCTTAA	1470	0.3803	MSSRLPKVHLWSLILLVCHFAISCKANQQSEYLYKFIQSKRFQQKPSSHGEAYYSSAIVDEHVSKVNVVEQQLRLMEADKVKSLPGQPKGVDFDQYAGYVTVDAKAGRELFYYFVESPLNSSTKPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDGTTLSLNKDAWNIVANVIFLESPAGVGFSYSKKSSNIGDNSTAKDSYTFLLNWLERFPQYKTRDFFIAGESYGGHYVPQLAHLILSNNKKMKNHTVINLKGIAVGNGWIDDNLCTKGMYDYFWMAGLNSDETHEGIQKLCDFGNFNVTNECNLYQSRANDELGNIDIYNIYAPLCNSSATKPSYSGSDFDPCSEDYTNAYLNLPEVQEALHAKATNWSSCSELSWTDSPASILPTINRLISSGISIWIYSGDIDGRVPITSTKYSINSLKLPVHTAWRPWYTGKEVGGYVIGYKGLTLVTVRGAGHMVPSYQPHRAVAMISSFLIGKLPPQLNS*	490

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal1g5820	489	ProSitePatterns	Serine carboxypeptidases, serine active site.	222	229	IPR018202	GO:0004185
	Mal1g5820	489	PANTHER	CARBOXYPEPTIDASE	19	483	-	-
	Mal1g5820	489	SUPERFAMILY	alpha/beta-Hydrolases	81	481	IPR029058	-
	Mal1g5820	489	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	19	483	IPR001563	GO:0004185\|GO:0006508
	Mal1g5820	489	ProSitePatterns	Serine carboxypeptidases, histidine active site.	451	468	IPR033124	GO:0004185
	Mal1g5820	489	Gene3D	-	387	481	-	-
	Mal1g5820	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	208	233	IPR001563	GO:0004185\|GO:0006508
	Mal1g5820	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	451	464	IPR001563	GO:0004185\|GO:0006508
	Mal1g5820	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	175	185	IPR001563	GO:0004185\|GO:0006508
	Mal1g5820	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	162	174	IPR001563	GO:0004185\|GO:0006508
	Mal1g5820	489	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	24	-	-
	Mal1g5820	489	Pfam	Serine carboxypeptidase	85	479	IPR001563	GO:0004185\|GO:0006508
	Mal1g5820	489	Gene3D	-	347	378	-	-
	Mal1g5820	489	Gene3D	alpha/beta hydrolase	73	340	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal1g5820	Mal-Chr1	135693874	135698183	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal1g5820	355	482	Calmodulin-binding Proteins	AT2G22960	30.827	4.69e-12	63.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal1g5820	1	135693874	135698183	Mal1g5820	1	135693874	135698183	ECH