Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5683 ATGCTTTCATATGAGATTAATAATCCTTTGATGGGTTTTGAAACATCTTTCAAAGGTTGTTTTTTTAGTGTTTTGGACAATGAAAAAATGGATCTGAAGTTGATGATTGAAGAGCTTGATTCAATTGATGTTCCTTCAGTTTTTATTTGTCCAATTTCACTTGAACCAATGCAAGAGCCTGTGACACTTTGCACTGGTCAAACCTATGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGAGTTATGGGATGATTCAATCACTCCAAACAACACTCTCAAACAATTGATCTTTACTTGGTTCTCACACAAGTACTTGGGAATGAAGAAGAAGCTTGAAGATGTTCAAGGAAGGGTTTTGGAAACTTTGGAGACACTCAAGAAGGTAAAGGGTCAAAGTAGAGTCAAAGCTCTTAAGGATCTTAGAAAACTTGTTGTTTCTCATGTTTGTGCTAGGAAAACATTGTTGGAAAATGGTGGGGTTGGTTTGGTTTCTTCTTTGTTAGGTCCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATTGGTATCATTGTGAATTTGGATTTGAGTTTAGAATTGAAGAGAAGAAATCTTATGCATCCAGCTAAAGTTTCATTGGTTGTTGATATTATGAATGAAGGAACCATTGAAACAAAGATGAATTGTGCTAAATTGATTGAAATGTTGTTGATGGAATTAGAAGGAGATGAAACTATGATTGAGATTGTGTCAAGTTTGAGTCTTTTGGTTGGGTTATTAAGATTGGTGAGAGATAAGAAACATCCAAATGGAGTCTTAATTGGTCTTACATTGCTTAAAAAAGTATTATGTTGTCATGAATCAATTAAAGGTTCTCTGATAAGCATAGGAGCAATTCCTCAATTGATTGAGATTTTACCAAATTTGAATAATGAGTGTTTGGAGATAGCACTTTATATATTAGAGGTATTGTCAACACTTGAAGAAGGGAAATTGGCTTTGAAAGAATGTCCAAACATTATACCTAATGTGGTTAAGATGTTGATGAGAGTCTCAGAAAATTGTACACAATTTGCATTGTCAATATTGTGGGCTATTTACAAGCTTGCACCTGAAGAATGTGCTTCAAAAGCTGTGGAAGCTGGATTGGCTTCAAAACTATTGCTTGTGATTCAGAGTGGTTGTAATCCTGTTTTGAAACAGAAGTCTTCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTATTTTTATTTCTAAGTGTATGCTTACTACAACAATACAATGA 1302 0.341 MLSYEINNPLMGFETSFKGCFFSVLDNEKMDLKLMIEELDSIDVPSVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLIFTWFSHKYLGMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTLLENGGVGLVSSLLGPFTSHVVGCEAIGIIVNLDLSLELKRRNLMHPAKVSLVVDIMNEGTIETKMNCAKLIEMLLMELEGDETMIEIVSSLSLLVGLLRLVRDKKHPNGVLIGLTLLKKVLCCHESIKGSLISIGAIPQLIEILPNLNNECLEIALYILEVLSTLEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQKSSEFLKMCSVNYSTSIFISKCMLTTTIQ* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5683 433 ProSiteProfiles U-box domain profile. 43 117 IPR003613 GO:0004842|GO:0016567
Mal1g5683 433 Gene3D - 128 412 IPR011989 -
Mal1g5683 433 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 26 432 - -
Mal1g5683 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 125 IPR013083 -
Mal1g5683 433 SUPERFAMILY ARM repeat 143 416 IPR016024 -
Mal1g5683 433 SUPERFAMILY RING/U-box 38 112 - -
Mal1g5683 433 SMART Ubox_2 47 110 IPR003613 GO:0004842|GO:0016567
Mal1g5683 433 Pfam U-box domain 44 114 IPR003613 GO:0004842|GO:0016567
Mal1g5683 433 CDD RING-Ubox_PUB 48 90 IPR045210 -
Mal1g5683 433 PANTHER WDSAM1 PROTEIN 26 432 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5683 Mal-Chr1 133394391 133395692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5683 27 433 U-box Gene Family AT3G49810 62.654 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5683 - - gmx:100803878 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5683 1 133394391 133395692 Mal1g5683 1 133394391 133395692 ECH