Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5653 ATGAATTTTGATGATACCTCTAACACATGGCTTCAACTTGATCTTGGTCTTTTCCTTCATGATCATTTTGATGACCATAGGAAGAGAGAAAACAAGAAGAAAAAAGTGGAAAAGCAATCAAAATGTGATAAGGCTTATCTATCACTTACATTAGGACCATCAAAGGAAGAGGATGTAGAAAATACTAAAATTCAACATTTAGCCTCAAAGACTGAATCTTGTGATCAAACTTTAGTTACTCAAGTTGCTTCTCCAAGCATAGAGTCTTCATTTTCAAACTCCACTAGCATCAAGAAGGAGAGTGGTGAGGAATTTGAGGTAGAGATAGAGAAGGGTCCAATTACAAGGATTGAAAATGTTGATGAAGATGGTAACCCAAGGAAGAAACTTAGGCTCACAAAAGAACAATCAGAAGTGTTGGAGGAAAATTTCAGAGAGCATTCTACTCTTAATCCGAAGCAAAAGCAAGTATTAGCAAAAAGGCTGAATCTGCAGGCTAGGCAAGTAGAGGTGTGGTTTCAAAATCGGAAAGCCAGAACAAAACTGAAACAAACGGAATCCGATTGCGAAGTGCTAAAGAAGTGCTGCGAAACTCTAACAGAGGAGAACAAGAAATTGCAAAAAGAGCTGCAAGAACTTAGGTCAATGCAAACAATGGCAGCAACACCTTTTTATATGCAGATTCCAGCAGCAACACTTACAATATGCCCTTCTTGTGAGACAATTTGTGGTGGTACCAACAACAATGGTTCCTCACCTATGACAACATTGCTAGTTGGCACTAAGGCTCATCATCGTCACTTGTATGAAAATAATGATAATTTTCAATTCCCTCACCTATGA 843 0.382 MNFDDTSNTWLQLDLGLFLHDHFDDHRKRENKKKKVEKQSKCDKAYLSLTLGPSKEEDVENTKIQHLASKTESCDQTLVTQVASPSIESSFSNSTSIKKESGEEFEVEIEKGPITRIENVDEDGNPRKKLRLTKEQSEVLEENFREHSTLNPKQKQVLAKRLNLQARQVEVWFQNRKARTKLKQTESDCEVLKKCCETLTEENKKLQKELQELRSMQTMAATPFYMQIPAATLTICPSCETICGGTNNNGSSPMTTLLVGTKAHHRHLYENNDNFQFPHL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5653 280 SMART HOX_1 125 187 IPR001356 GO:0003677
Mal1g5653 280 PANTHER - 5 268 - -
Mal1g5653 280 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Mal1g5653 280 Gene3D - 120 190 - -
Mal1g5653 280 Coils Coil 182 219 - -
Mal1g5653 280 CDD homeodomain 126 184 IPR001356 GO:0003677
Mal1g5653 280 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Mal1g5653 280 SMART halz 183 228 IPR003106 GO:0006355|GO:0043565
Mal1g5653 280 SUPERFAMILY Homeodomain-like 124 191 IPR009057 -
Mal1g5653 280 Pfam Homeobox associated leucine zipper 183 216 IPR003106 GO:0006355|GO:0043565
Mal1g5653 280 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Mal1g5653 280 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5653 Mal-Chr1 132687913 132689986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5653 1 242 Homeobox Transcription Factor Family AT4G37790 47.773 3.55e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal1g5653 Homeodomain 6.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5653 K09338 - gmx:100797650 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5653 1 132687913 132689986 Mal1g5653 1 132687913 132689986 ECH