Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5624 ATGGATGAAAAGGTGAAAACTCTTCAATTAGAGTTACAACATGTGAGAGAGGAGAACAATACTTTAAGATTCATGCTTGAAGTTATGAGAATCAAGTGTAGAAAGCTTGAGTCCCATGTTCAAGAGATCAACAAGGAAGAACAGAGGGGGATCATAAATTCTAACCATCAAATTGGGTTAATACCTAACCTTGATTCAAGCAAAAAACCAAGATTAGAGTTTCCCACAGCACAAAAGCCACCACAAGTATTTGTACGAATTCAACCAAATGATGAAAGTTTGATAATAAAAGATGGCTTTCAATGGAGGAAGTATGGGCAAAAGGTTACCAAAGACAATGCTTATCCTAGAGCTTACTTTAGGTGCTCCATGGCTCCTAGTTGCCCCGCAAAAAAGAAGGTGCAAAAATGCATAAATGATAGGTCTATCCTTGTTGCAACATATGATGGAGAACACAACCATGGTGTCTCTTATGAGTCATTCCAACCATCTTCATCCACACCAAAATTTTCATCAATGTCTATTAATAAGTTACCAACAACAACACTTAATGACAAAGAAGCCATAAACACTAGAGTTTGTGAGGATGCCATGCAACAATTTGGCTATGGAAGGCACATTAAATTTGAAGAATATGCAAGTTCCTTGATCAAAGATCCTGACTTCACTGCAGCATTAGCTGAAGCAGTTGCTCAAACCATCACTGATCAAGAACATAAGCGACAAGGTCTAAACCTCGATTTGAATCTTTCAGAAGAGTGA 762 0.378 MDEKVKTLQLELQHVREENNTLRFMLEVMRIKCRKLESHVQEINKEEQRGIINSNHQIGLIPNLDSSKKPRLEFPTAQKPPQVFVRIQPNDESLIIKDGFQWRKYGQKVTKDNAYPRAYFRCSMAPSCPAKKKVQKCINDRSILVATYDGEHNHGVSYESFQPSSSTPKFSSMSINKLPTTTLNDKEAINTRVCEDAMQQFGYGRHIKFEEYASSLIKDPDFTAALAEAVAQTITDQEHKRQGLNLDLNLSEE* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5624 253 Pfam WRKY DNA -binding domain 97 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal1g5624 253 ProSiteProfiles WRKY domain profile. 91 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal1g5624 253 PANTHER WRKY TRANSCRIPTION FACTOR 49 2 234 - -
Mal1g5624 253 Coils Coil 26 46 - -
Mal1g5624 253 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 234 IPR044810 GO:0003700
Mal1g5624 253 SMART WRKY_cls 96 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal1g5624 253 SUPERFAMILY WRKY DNA-binding domain 92 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mal1g5624 253 Gene3D WRKY domain 82 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5624 Mal-Chr1 132210771 132212620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5624 68 239 WRKY Transcription Factor Family AT1G80840 42.781 4.72e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mal1g5624 WRKY 9.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5624 - - mtr:MTR_1g013790 410.609