Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5587 ATGAGTAGCTTGGTTGAAAGGCTTCGTGTAAGATCTGATCGTAAGGCATTTTATACTATAGATAAGTCAGACGATGATGCTGATTTAATGCCCAGAAAAAGTCAGACAACTCGGGAAAAGTTTGAGAGGATTGTAAGAAGTGATGCAAAAGAGGATTCATGTCAAGCTTGTGGAGAGGGCGGAAATCTTCTGAGCTGTTATACGTGCACTTATTATTTCCACCCTGGGTGTTTACTCTTACCACTCAAAAGCTCCCGTCCTGGCAACTGGATGTGCCCTGAATGTGTTAGCCCACTTAAAAATATTGATAAGATATTAGATAGTGAGATGCGCCCCACTGTAGCTGGGGAAAGTGATGCCGAAAATTTGGTGTCAAAACAAAGTTTGGTAAAACACTATCTTGTTAAGTGGAAGGGGCTATCACATTTGCATTGCAGATGGGTGCCAGAGGAAGAGTTTACGAAGGCTTTCAAGATTTATCATCATTTGAAGACCAAAGTAAACAACTTTCATCGTCAAATGGCACAAGGCAAAAAATTCGATGAAGATTTTGTTGCCATTCAACCTGAATGGACTATGGTTCATCGAATACTTGCTCGCAGGGGCAGTGGCGATGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCTTATGATGAATGCCATTGGGAGCTTGAGTCAGATATCTCTTCGTTTCAGGAAGAAATAGATAGATTTAATATGTTTCAGTCTAGGTCTAGGAAGATTTCCTATAGTAAGCAAAAAACCAGTGTTAACAATGATGCTGAATTGATGAAGCAACAGAAAGAATTTCAACAGTATGAGCATAGCCCGGAGTTTCTTTCAGGGGGTACACTACATCCATATCAACTTGAAGGATTGAACTTCCTACGTTACTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTACTTAGCATCCCTTTTCAAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCTACACTACGAAACTGGGAGCGCGAATTTGAAACTTGGGCACCTCAAATGAATGTTGTTATGTATGTTGGATCTTCCCAAGCTCGTAGCATTATTAGAGAATATGAATTTTACTTTCCGAAGAATCTGAAGAAGAACAAGAAAAAGAAGTCTAAGAAAATTGTTACAACAAGCAAGTTGGAAAACATAAAGTTTGATGTCCTTTTGACATCGTATGAGATTATAAACTTTGATACCGCATCATTGAAGCCTATAAAGTGGGAGTGCATGATAATTGATGAAGGTCACCGTCTCAAAAACAAGGATTCTAAATTGTTTTCTTCATTGAAGCAATACTCTAGCAGACATCGTGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTCTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAAGAAGAGTTTAAGGATATCAATCAAGAGCAACAGGTTTCGAGGCTTCATACAATGTTGGCCCCACATCTCCTGCGAAGATTGAAGAAGGATGTTATGACTAAACTACCTCCTAAAAAGGAGCTTATTGTACGTGTTGAATTGAGCAATAAACAGAGAGAATATTATAAGGCAATTTTGACACGTAATTATGAGATATTAACTCGCCATGGTGGAGCACAAATTTCTCTTAACAATGTTGTTATGGAACTGCGTAAGCTATGTTGTCATCCGTACATGTTCGAAGGAGTTGAACCAGTTCTGAACAAAGAAGAAGCATATAATCAACTGCTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGCTGATGACGAAGCTTAAAGAGAAAGGGCATAGAGTCCTTATATTTTCCCAATTTCAGGGCATGCTGGACATGCTTGAAAATTATTGTCTTTACAAGGATTGGCAGTATGAAAGGATAGATGGAAAGGTTGGTGGAGCTGAAAGACAAGTGCGGATAGATCGATTTAATGCTAAAGATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGTGGATTGGGGATAAACCTTGCAACCGCGGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTTCAAGCTATGGCCAGAGCTCATCGTGTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTGTAACTCGAGGAACAATTGAAGAAAGGATGATGGAAATAACGAAGAAGAAAATGGTGTTAGAACACTTAGTTGTAGGCAGCAAGGCTCAAAATATTAACCAGGAAGAGTTGGATGACATCATCAGATATGGCTCAAAGGAGCTATTTTCTGATGAGAATGATGTGGCGGGAAAATCTCGCCAAATTCATTATGATGATGCTGCTATTGACAGATTGTTGGATCGCGATCAAGTTGGAGATGAAGAGGCCAATTTGAATGATGAAGATGAAAGTGGATTTCTTAAAGCCTTTAAGGTGGCAAATTTTGAATACATTGATAAAGTTGAGGCTGCAGAAGAAAACAGAGAAATAGAGAATAAAGATTCTGTGAGCAGTTCCGAAGGAAAAAAATACTGGGAGGAATTGCTAAAGGACAGATATCAAGAGCAAAAAGTTGAAGAGCATAATGCCTTGGGAAAAAGGAAGCGAAACCGCACAACATTACTGTTGGTTTCCTTTAAGGGGGAAAATTTTGCTCGTCTAGAAGATTTAGGCTCGGACGGTGAGGATGATGATTTTGAAGTGGATCTTACTAATGGTGATTCAAATTCAACAGGAACTACTACTGCTAGAAGACATTCCAAAAAGAAAACTCCTGCAGATAACACAGATCCACCACCTTTAATGGAAGGTGAAGGAAGATCTCTAAGAGTGCTTGGTTTTACTCCAAGTCAGAGAACTGCTTTCCTTAATATTTTAATGAGGTTTGGGGCCGGCGATTATGATTGGAAGGAGTTTATTCCCCACATGAAGCAGAAGACTTATGAAGAAATCAAAGAGTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAAATGATTCCCCTACATTCTCAGATGGTATTCCAAAAGAAGGACTTCGAATAGATGATATACTTGTTAGAATTGCGATTATGTCATCGATAAGGGAAAAAGTGAAGTTTGCATCAGAAAATCCCGGCACTCCACTTTTTTCAGATGACATCTTGTCACAATATGCAGTCTTCAGAAGTGCAAGGATATGGAAGGAGGAGCATGATTTACTCTTACTGCAAGGAGTTTTGAAGCATGGGTATGGAAAGTGGGCAGCTATTGTTGATGATAAGGATCTGAATATTCCGATAGTCAACTGTCAGGAGTTAAATACCCCCTTCATAAATTTACCATCGCAAGTTATGGAATCCCCTTGCAACCAGTCTAGGGAGAATAGTGGTAGCGCCACAGCAGTTAATGGACATGGAGCACATGGCTCGTGTGATGCTAGGAACATGCAGAGAAGACAAATTGATTTCATAAAAAGGAGGTTTCTTAACTTGGAAAAATGTCTCAATTATGAGTACTACCAGAAACAATACTCTGATGAGATGGAAGCAAGTGGGGGGAACTATCAAGAACCTATAACTGAACCTGCTCCCATCCAAACGATTTATCAACCGCCTCAAGTAGAAAAAATAACTTTTGAAGAATTCTCTATTTCTGCTTGTGACAATGATCCTAATCGGTCGACACTGACTCATCTTTACAATGAGATGTGCAATTTTGTGGACAAAAATCCTGAGGTTATGGTTCAGACATCAATGTCCAGACAACCGATACAACTAGAAACCATTGTAGGACATGTCAACAAAATTTTAACACCAAATCAATCCGCTTGCGAGCCAATGACAAATTCTGATAACAGACCAGTTGTCATATCACAGACTCAAGTTTTGGAATCTGAATCCATTTCATCATCCCTCAAGAAGATGCAAATCTAG 3972 0.3927 MSSLVERLRVRSDRKAFYTIDKSDDDADLMPRKSQTTREKFERIVRSDAKEDSCQACGEGGNLLSCYTCTYYFHPGCLLLPLKSSRPGNWMCPECVSPLKNIDKILDSEMRPTVAGESDAENLVSKQSLVKHYLVKWKGLSHLHCRWVPEEEFTKAFKIYHHLKTKVNNFHRQMAQGKKFDEDFVAIQPEWTMVHRILARRGSGDEKEYLVKWKELPYDECHWELESDISSFQEEIDRFNMFQSRSRKISYSKQKTSVNNDAELMKQQKEFQQYEHSPEFLSGGTLHPYQLEGLNFLRYSWSKQTHVILADEMGLGKTIQSIAYLASLFKENVSPHLVVAPLSTLRNWEREFETWAPQMNVVMYVGSSQARSIIREYEFYFPKNLKKNKKKKSKKIVTTSKLENIKFDVLLTSYEIINFDTASLKPIKWECMIIDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEQQVSRLHTMLAPHLLRRLKKDVMTKLPPKKELIVRVELSNKQREYYKAILTRNYEILTRHGGAQISLNNVVMELRKLCCHPYMFEGVEPVLNKEEAYNQLLESSGKLQLLDKLMTKLKEKGHRVLIFSQFQGMLDMLENYCLYKDWQYERIDGKVGGAERQVRIDRFNAKDSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRVGQTNKVLIYRLVTRGTIEERMMEITKKKMVLEHLVVGSKAQNINQEELDDIIRYGSKELFSDENDVAGKSRQIHYDDAAIDRLLDRDQVGDEEANLNDEDESGFLKAFKVANFEYIDKVEAAEENREIENKDSVSSSEGKKYWEELLKDRYQEQKVEEHNALGKRKRNRTTLLLVSFKGENFARLEDLGSDGEDDDFEVDLTNGDSNSTGTTTARRHSKKKTPADNTDPPPLMEGEGRSLRVLGFTPSQRTAFLNILMRFGAGDYDWKEFIPHMKQKTYEEIKEYGTLFLSHIAEDINDSPTFSDGIPKEGLRIDDILVRIAIMSSIREKVKFASENPGTPLFSDDILSQYAVFRSARIWKEEHDLLLLQGVLKHGYGKWAAIVDDKDLNIPIVNCQELNTPFINLPSQVMESPCNQSRENSGSATAVNGHGAHGSCDARNMQRRQIDFIKRRFLNLEKCLNYEYYQKQYSDEMEASGGNYQEPITEPAPIQTIYQPPQVEKITFEEFSISACDNDPNRSTLTHLYNEMCNFVDKNPEVMVQTSMSRQPIQLETIVGHVNKILTPNQSACEPMTNSDNRPVVISQTQVLESESISSSLKKMQI* 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5587 1323 SMART DUF1087_2 838 904 IPR009463 -
Mal1g5587 1323 Gene3D - 104 175 - -
Mal1g5587 1323 SMART helicmild6 637 721 IPR001650 -
Mal1g5587 1323 SMART ultradead3 282 495 IPR014001 -
Mal1g5587 1323 Gene3D - 529 752 IPR027417 -
Mal1g5587 1323 SMART PHD_3 53 96 IPR001965 -
Mal1g5587 1323 CDD CD2_tandem 190 239 - -
Mal1g5587 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 519 IPR027417 -
Mal1g5587 1323 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Mal1g5587 1323 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 771 IPR001650 -
Mal1g5587 1323 Gene3D - 182 241 - -
Mal1g5587 1323 SUPERFAMILY Chromo domain-like 66 176 IPR016197 -
Mal1g5587 1323 MobiDBLite consensus disorder prediction 1134 1149 - -
Mal1g5587 1323 Gene3D - 1035 1189 - -
Mal1g5587 1323 Pfam CHD subfamily II, DUF1087 840 892 IPR009463 -
Mal1g5587 1323 CDD SF2_C_SNF 606 732 - -
Mal1g5587 1323 SUPERFAMILY Chromo domain-like 184 240 IPR016197 -
Mal1g5587 1323 CDD CD1_tandem 98 172 - -
Mal1g5587 1323 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 240 IPR023780 -
Mal1g5587 1323 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Mal1g5587 1323 MobiDBLite consensus disorder prediction 1134 1154 - -
Mal1g5587 1323 ProSiteProfiles Chromo and chromo shadow domain profile. 118 182 IPR000953 -
Mal1g5587 1323 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
Mal1g5587 1323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 103 IPR013083 -
Mal1g5587 1323 Gene3D - 278 528 IPR038718 -
Mal1g5587 1323 SMART chromo_7 190 244 IPR000953 -
Mal1g5587 1323 SMART chromo_7 99 165 IPR000953 -
Mal1g5587 1323 Pfam CHD subfamily II, SANT-like domain 932 1065 IPR009462 GO:0003677|GO:0006338
Mal1g5587 1323 Pfam Helicase conserved C-terminal domain 608 721 IPR001650 -
Mal1g5587 1323 ProSiteProfiles Chromo and chromo shadow domain profile. 192 239 IPR000953 -
Mal1g5587 1323 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1053 - -
Mal1g5587 1323 Pfam PHD-finger 54 96 IPR019787 -
Mal1g5587 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 775 IPR027417 -
Mal1g5587 1323 SMART DUF1086_2 906 1068 IPR009462 GO:0003677|GO:0006338
Mal1g5587 1323 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1053 - -
Mal1g5587 1323 MobiDBLite consensus disorder prediction 916 957 - -
Mal1g5587 1323 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Mal1g5587 1323 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5587 Mal-Chr1 131588656 131601522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5587 308 773 RAD5 or RAD16-like Gene Family AT1G02670 24.119 1.30e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal1g5587 SNF2_N 2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5587 K11643 - gmx:100790230 1865.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5587 1 131588656 131601522 Mal2g0938 2 10901400 10921210 PCT