Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5585 ATGCGAGTTCTTGCCGTTGATGATGATAGAACATGTCTCAAGATTTTGGAGAAACTTCTCCAAAGGTGTCAATACCATGTAACCACTGCTCAAAACGCGATAACGGCGTTGAACTTGTTGAGAAAAAACAAAAGCAATTTTGACCTAGTAATCAGCAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACTTACCTGTCATAATGTTTTCAGCAAACGATGATCCAAAGATGGTGATGAAAGGAATTGAGCACGGTGCTTGTGATTATCTTCTGAAACCTGTTAGACTGAAAGAGGTACAGATGATTTGGCAGCATGTAATCAGGAAGAAGAAAACTAGCGAAAGAAGCAATCATGACGCGCCTAATTCTGATAGTGGAAATGGAATAGGTTCAGCCGAGACAGGAAATTCAGATCAAAATGAAAAGCGATCAAGAAAACGGAAGGATAAGAATGAAGATGATGTTGAAGAGGAGAATGAGGATGATCATGACAATGATGATCCAACGGCACAGAAGAAGCCTCGAGTTGTTTGGTCTGCTGACTTACACCGCAAGTTTGTTAACGCTGTTAATCAATTAGGCATCGACAAGGCTGTACCAAAAAGGATTCTCGAACTGATGAATGTCGAAAATCTGACAAGGGAGAAAGTGGCCAGCCATCTCCAGAAATATAGACTCTATCTAAAAAGAATTAGCTGTGAGGAAAACAAGCAAGCTTACTGTTCCGATGCGTCCTATTTAAGAAGTGGAGTTGGAGGACATTTGCATACATTGAATGGCTCTACACAGTTTCATAACCATAATAACAATCCTTTCGGATCCTTTCTATCAGGCGGCGGTATGAGTACTAGATTCAACACTCCTACTAATGTCAATATGAATGGATTGCCATCTTCTGGAACTCTTCAACTAAGTCAGACACATAATTTAAACAACTCAACAATTGATCAGTTAGAGTTCCAATCGGCCATAGCTCGCGGCAATCCAAATGATGTTCAAGGAGGTATTTCTAATAGTCCTATCCAAAACATGACCAATAAACTCCCAAATTTTAAAGCAGAAGTAACTATGAGTTGCACAAACAATGCCTTGACGTTAGAAGCAGATACTCAAGACAAACAAGTAGGTGAAGGATACAAAAGTTTCGCCTCTCAAAATTCAGAATATCTCCCTTTACTTGGAAACAGAAGGTGCAATGGTATTTGGTCAAGCACTATGCAATTACCTCCTATGCTTCCTACAGATAATAATGTGTCATTTCAAGGTTGGGATAATAACAATAATCATGATGGAAGTTACCATTCTTCTAATGTTATTGGTAGTTCAATAGGCTCTTCTATGATTCCTGTTGTGAATGCTGTTGAACAAGAAGGAAACTTGGACTACAATTATTGTGATTCGGTACAAATGAAAAATGATGCGTTCACGGACTCAGAGGAAGGGCTGTCATTTAAACCACATCAAGAATCTTGGTTTAGTCGAAGACATCGTCAGTGA 1527 0.3929 MRVLAVDDDRTCLKILEKLLQRCQYHVTTAQNAITALNLLRKNKSNFDLVISNVHMPDMDGFKLLELVGLEMDLPVIMFSANDDPKMVMKGIEHGACDYLLKPVRLKEVQMIWQHVIRKKKTSERSNHDAPNSDSGNGIGSAETGNSDQNEKRSRKRKDKNEDDVEEENEDDHDNDDPTAQKKPRVVWSADLHRKFVNAVNQLGIDKAVPKRILELMNVENLTREKVASHLQKYRLYLKRISCEENKQAYCSDASYLRSGVGGHLHTLNGSTQFHNHNNNPFGSFLSGGGMSTRFNTPTNVNMNGLPSSGTLQLSQTHNLNNSTIDQLEFQSAIARGNPNDVQGGISNSPIQNMTNKLPNFKAEVTMSCTNNALTLEADTQDKQVGEGYKSFASQNSEYLPLLGNRRCNGIWSSTMQLPPMLPTDNNVSFQGWDNNNNHDGSYHSSNVIGSSIGSSMIPVVNAVEQEGNLDYNYCDSVQMKNDAFTDSEEGLSFKPHQESWFSRRHRQ* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5585 508 SMART REC_2 1 113 IPR001789 GO:0000160
Mal1g5585 508 Gene3D - 179 242 - -
Mal1g5585 508 CDD REC_typeB_ARR-like 3 117 - -
Mal1g5585 508 PIRSF RR_ARR_type-B 1 506 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mal1g5585 508 Pfam Myb-like DNA-binding domain 185 235 IPR001005 -
Mal1g5585 508 MobiDBLite consensus disorder prediction 119 182 - -
Mal1g5585 508 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 479 IPR045279 GO:0009736
Mal1g5585 508 MobiDBLite consensus disorder prediction 129 147 - -
Mal1g5585 508 MobiDBLite consensus disorder prediction 148 163 - -
Mal1g5585 508 Gene3D - 1 133 - -
Mal1g5585 508 ProSiteProfiles Response regulatory domain profile. 2 117 IPR001789 GO:0000160
Mal1g5585 508 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 183 236 IPR006447 GO:0003677
Mal1g5585 508 SUPERFAMILY CheY-like 1 123 IPR011006 -
Mal1g5585 508 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 180 239 IPR017930 -
Mal1g5585 508 SUPERFAMILY Homeodomain-like 181 240 IPR009057 -
Mal1g5585 508 Pfam Response regulator receiver domain 3 109 IPR001789 GO:0000160
Mal1g5585 508 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5585 Mal-Chr1 131568616 131571206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5585 1 317 Response Regulator Gene Family AT2G25180 55.589 7.79e-106 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mal1g5585 Response_reg 1.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5585 - K14491 mtr:MTR_1g013170 754.207