Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5581 ATGGAAAGACTAAACAAAGAACCATGCATCTTCTCTTCTCAAGAAACTCCTCAAAGTCCAAGCACACCATTACAAAATCAACATGAAAAGAAGAAACAACAATCTATTGAGGTAGAAGAAGAGATCACAAAGGTAGAAAATTTATTTGATCTAAATGTATCTAGCAATGATTCTATTCTTGATTGTAATAATCAACAAGAAGTAGAACTCAATCTCATTACTTCTTTAGATGTTGGTAATTCATCATCACAAAACAATAACACTCTTGAGGCAGAACAGAGAGTTTTTTCTTGTAACTATTGTCATAGAAAATTCTATAGCTCACAAGCATTAGGTGGACACCAAAATGCTCACAAAAGAGAGAGGTCAATAGCAAAAAGAGGACAAAGATTTGGAACACAAATTATGGCTTCAGCATCTGCTTTTGGATTTCCTATGCATAATAAACAAAGTTATGCAAACATGGCTTCTTTGCCTCTTTATGGTGCTTTTGGTAATAAACCTCTTGGAATTCAAGCACACTCTATGATCCATAAACCTTCTCATGTTTCATCTAATGGATTTGGAAACTCTTATGGACATCATCATCAACATGGTTGGTCAAATTCAAGAATCTTTATGGATCAACAACCTGGAATAGCAAAACTAGGTGTGGCTGATTTTCATAGAACAACATCATCATCAAGAGGAAGTGCTGGTAGATATGAAGTGGTGGATACTATGATGAATTCTAATAAAGAAATGAAGCAGAAGCAGCTTGATTTAAACCTTAAGCTATGA 780 0.3436 MERLNKEPCIFSSQETPQSPSTPLQNQHEKKKQQSIEVEEEITKVENLFDLNVSSNDSILDCNNQQEVELNLITSLDVGNSSSQNNNTLEAEQRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGQRFGTQIMASASAFGFPMHNKQSYANMASLPLYGAFGNKPLGIQAHSMIHKPSHVSSNGFGNSYGHHHQHGWSNSRIFMDQQPGIAKLGVADFHRTTSSSRGSAGRYEVVDTMMNSNKEMKQKQLDLNLKL* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5581 259 MobiDBLite consensus disorder prediction 1 35 - -
Mal1g5581 259 MobiDBLite consensus disorder prediction 9 29 - -
Mal1g5581 259 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Mal1g5581 259 Coils Coil 28 48 - -
Mal1g5581 259 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Mal1g5581 259 Gene3D Classic Zinc Finger 74 151 - -
Mal1g5581 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Mal1g5581 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 259 IPR044246 GO:0009788
Mal1g5581 259 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5581 Mal-Chr1 131446426 131447205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5581 9 259 C2H2 Transcription Factor Family AT5G10970 40.357 2.29e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g5581 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5581 - - lja:Lj5g3v0526470.1 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5581 1 131446426 131447205 Mal2g0934 2 10840470 10841204 PCT