Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5568 ATGGCTTACCACAACCAACATCTTTCACAAGAGTTACCAATCCACCATTTCACAGACCAAACCAATAACAACAATAACAACTTTGGCTCACCCGACCCTAACTCCAAACCTGAATCCGACCCTAATAACCAACTCCAAACCACACCTAATTGGCTCAACAACGCAATCCTTCAAACCCACTACACCGACAACAACAACACCACCAACAACAACAACAATAACAACGACGTTACCAACAACGTTAACAACGACAACACCAACGGTAACAATTCTTCTAATTTCCTCAACCTCCAACCATCTTCCGACTCCGCCGCCGGTCAATGGCTTGCACGCTCGATTCTTCACCGTCAACAGCACGGTGGTGAAGTAATCAACGATATCACTACTACCATGACCGGAGAAGTAGAACACGAGGGCGACGGTGGGAAGAGTGAGGCGGTGGTGGTTGGAGACGGAGGAGGAGGACTGGTGAGCTGGCAGATGGGGAGATGGAAGGCGGAGATTATGGCACATCCGTTATATGAACAGTTGTTGTCGGCACATGTGGCGTGTTTGAGGATAGCAACGCCGGTGGATCAGTTACCGAGGATTGATGCTCAGTTAGCACAGTCGCAGAATGTGGTGGCGAAATACTCCGCGTTTGGACAGAACATTGGAGGAGTAGATGATAAAGAACTTGACCATTTCATGTCACACTATGTTTTATTGCTCTGTTCCTTCAAAGAACAATTGCAACAACATGTCCGCGTCCACGCCATGGAAGCTGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTATCACCTGGAGAAGGTACGGGGGCAACAATGTCTGATGACGAAGATGAACAAGTGGATAGTGACGCAAATCTGTTTGATGGTAGTTTTGATGGCGGTGCAGATAACATGGGATTTGGCCCTCTTGTACCAACAGAGAATGAAAGGTCCCTAATGGAGCGCGTAAGACAAGAGTTAAAGCATGAACTGAAACATGGTTATAAGGAGAAAATTGTGGACATCAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACCTCTGTCCTTAAGGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAGGAAACTGGTTTGCAACTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAACGAAAAAGGGAGACTTAG 1287 0.4623 MAYHNQHLSQELPIHHFTDQTNNNNNNFGSPDPNSKPESDPNNQLQTTPNWLNNAILQTHYTDNNNTTNNNNNNNDVTNNVNNDNTNGNNSSNFLNLQPSSDSAAGQWLARSILHRQQHGGEVINDITTTMTGEVEHEGDGGKSEAVVVGDGGGGLVSWQMGRWKAEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQNIGGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGSFDGGADNMGFGPLVPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRET* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5568 428 Gene3D - 350 411 - -
Mal1g5568 428 SUPERFAMILY Homeodomain-like 351 414 IPR009057 -
Mal1g5568 428 SMART KNOX2_2 216 271 IPR005541 GO:0003677|GO:0005634
Mal1g5568 428 Pfam KNOX1 domain 165 205 IPR005540 GO:0003677|GO:0005634
Mal1g5568 428 SMART ELK_2 329 350 IPR005539 GO:0003677
Mal1g5568 428 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 426 - -
Mal1g5568 428 MobiDBLite consensus disorder prediction 271 290 - -
Mal1g5568 428 Pfam KNOX2 domain 222 270 IPR005541 GO:0003677|GO:0005634
Mal1g5568 428 Pfam ELK domain 329 350 IPR005539 GO:0003677
Mal1g5568 428 Pfam Homeobox KN domain 369 408 IPR008422 GO:0003677|GO:0006355
Mal1g5568 428 SMART KNOX1_2 162 206 IPR005540 GO:0003677|GO:0005634
Mal1g5568 428 SMART HOX_1 351 416 IPR001356 GO:0003677
Mal1g5568 428 MobiDBLite consensus disorder prediction 17 48 - -
Mal1g5568 428 CDD homeodomain 352 413 IPR001356 GO:0003677
Mal1g5568 428 ProSiteProfiles ELK domain profile. 329 349 IPR005539 GO:0003677
Mal1g5568 428 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 36 426 - -
Mal1g5568 428 ProSiteProfiles 'Homeobox' domain profile. 349 412 IPR001356 GO:0003677
Mal1g5568 428 MobiDBLite consensus disorder prediction 61 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5568 Mal-Chr1 131140560 131144047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5568 1 426 Homeobox Transcription Factor Family AT5G25220 65.541 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mal1g5568 KNOX2 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5568 - - cam:101494477 663.685