Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5565 ATGCAGGATATTTTGAAGTATGCGGAAGATCACGAGCATGGTTTGTGTAACAAAAGACGTAAAACCTCTGTTCAAGAACACACAAACATGTCGTCCATCATTAATTCAGATTATTTCTGCTGTATCTGTCAAATCTCAAGCAATGATGAAGCTAACCGTTTATTGGAGTGTAGTAGCTGTCGAATTAAAGTGCATCAAGCTTGCTATGGTTTTTCAGCATTACCTAGACAAGGCGGTTGGTGTTGTAGATCATGCCGAGCAAAATCAAAAGATATTGTACCGTGTATAAAGGCTTGTGTCCTATGTGGTTATGAAGGTGGAGCCATGACCAGAGCATTATCGAGCCACTCAATTGTGAAAAGCCTCTTAAAAGAATGGAACTCTGAGAAAAATGGGAGGCCTATAAGTTACACAAGCAGATCTGACAAAAGGATGTCCAGAAATGGCAAACAAAACACTCCTAGCTCTGTTACTACTTTTGAAGTACATAACAGCATTACCGCAGGAGTTCTTGATCCTACTGTTAAGCAGTGGGTTCATACGGTTTGTGGGCTTTGGACTCCTGGAGCAAGATGCCGCAATAAATACACCATGAGTTCTATGAATGTATCTGGTGTTTCACGTCCAAAAGCTGATGTGGTCTGTTCAATTTGCAATCGATGGGGTGGTTCATGTATAGAGTGCAGGATTGTTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCCTACCAGAAGAACCTGTTGCAAAATGAAATTGAGGGAGTTAATGACGAGAAAGTTGGATTTTATGGAAGATGTGTGCTTCATGGTATTGGCCCCGATTGGCAGTCTGCATATGATCCTACTGATGCGATGGACAGGCGAGAGGAAAAGGAATTCACCTGTGCTAGGACAGAGGGTTACAAGGGCGGTTGCAGTGCCTTAAAACCCCGGGGTGGATACCGTGTTCCGGATGAGCAGTTAAATGCTTGGATTCACATAAATGGGCAGAAATTGCGTTCACAAGGAATTCCAAAATTTCCAGCTTCAGATATTGAGCGTGATTCTCGGAAAGAATATGCTCGGTACAAACAAGTGGAGGGCTGGAAAAATCTTTGTGTATTCAAATCTGGGATACATGGCCTTGGTCTTTATACTTCTCAGTTCATATCTCGGGGTAGTATGGTTGTAGAGTATGTCGGTGAAATTGTGGGACAACGTGTGGCTGATAAAAGAGAAATTGAATACATATCTGGAAGGAAACTTCAGTACAAAAATGCCTGTTACTTCTTTACGATAGACAAAGAACATATAATTGATGCCACAAGGAAGGGGGGAATTGCTCGATTTATTAACCACTCATGCCTGCCAAATTGCGCAGCGGAAGTGATTACTGTTAGGGATGAGAAGAAGGTTGTCTTCTTTGCAGAGAGGGACATATTAGCTGGTGAAGAGATTACTTACAATTACAACTTTAACCGCGAAGATGAAGAGAAGAAAATTCCATGTTACTGCAATTCAAAAAATTGCAGGCGCTCTATGAACTGA 1527 0.4185 MQDILKYAEDHEHGLCNKRRKTSVQEHTNMSSIINSDYFCCICQISSNDEANRLLECSSCRIKVHQACYGFSALPRQGGWCCRSCRAKSKDIVPCIKACVLCGYEGGAMTRALSSHSIVKSLLKEWNSEKNGRPISYTSRSDKRMSRNGKQNTPSSVTTFEVHNSITAGVLDPTVKQWVHTVCGLWTPGARCRNKYTMSSMNVSGVSRPKADVVCSICNRWGGSCIECRIVDCSVKFHPWCAYQKNLLQNEIEGVNDEKVGFYGRCVLHGIGPDWQSAYDPTDAMDRREEKEFTCARTEGYKGGCSALKPRGGYRVPDEQLNAWIHINGQKLRSQGIPKFPASDIERDSRKEYARYKQVEGWKNLCVFKSGIHGLGLYTSQFISRGSMVVEYVGEIVGQRVADKREIEYISGRKLQYKNACYFFTIDKEHIIDATRKGGIARFINHSCLPNCAAEVITVRDEKKVVFFAERDILAGEEITYNYNFNREDEEKKIPCYCNSKNCRRSMN* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5565 508 SUPERFAMILY SET domain 356 504 IPR046341 -
Mal1g5565 508 SUPERFAMILY FYVE/PHD zinc finger 27 98 IPR011011 -
Mal1g5565 508 CDD ePHD 177 260 - -
Mal1g5565 508 CDD SET_SETD1-like 354 504 - -
Mal1g5565 508 Pfam PHD-finger 52 86 - -
Mal1g5565 508 ProSiteProfiles SET domain profile. 363 484 IPR001214 GO:0005515
Mal1g5565 508 Gene3D SET domain 340 508 IPR046341 -
Mal1g5565 508 ProSiteProfiles Extended PHD (ePHD) domain profile. 153 270 IPR034732 -
Mal1g5565 508 ProSiteProfiles Zinc finger PHD-type profile. 37 88 IPR019787 -
Mal1g5565 508 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 9 508 - -
Mal1g5565 508 SMART PostSET_3 492 508 IPR003616 -
Mal1g5565 508 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 9 508 - -
Mal1g5565 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 92 IPR013083 -
Mal1g5565 508 MobiDBLite consensus disorder prediction 133 156 - -
Mal1g5565 508 SMART PHD_3 214 270 IPR001965 -
Mal1g5565 508 SMART PHD_3 39 86 IPR001965 -
Mal1g5565 508 SMART set_7 363 490 IPR001214 GO:0005515
Mal1g5565 508 ProSitePatterns Zinc finger PHD-type signature. 40 85 IPR019786 -
Mal1g5565 508 ProSiteProfiles Post-SET domain profile. 492 508 IPR003616 -
Mal1g5565 508 Pfam PHD-zinc-finger like domain 175 255 - -
Mal1g5565 508 Pfam SET domain 374 484 IPR001214 GO:0005515
Mal1g5565 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 269 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5565 Mal-Chr1 131120568 131127064 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5565 365 504 C2H2 Transcription Factor Family AT2G23740 35.220 4.84e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal1g5565 SET 4.8e-21 No_clan