Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5563 ATGCTTTTTTATACCATCGAAACCCAAATGCCGGATATTTTGGAGTATGCGGAAGATCACAAGCATGATTTGTGTAACAAAAGAAGTAAAATCTCTATTCAAGATAGCGCAAACATGTCAATCATTAATTCAGATTCTTTCTGCTGTGTCTGTCAAAGGTCAATCAATGATGAAGTTAACAGTTTATTGGAGTGTAATAAATGTCTAATTAAAGTGCATCAGGCTTGCTATGGTATTAAAGCATTACCCGAACGAGGTCGTTGGTGTTGTAGACCATGCCGAACAAACTCAAAAGATATTAACCTGTTGCAAAATGAAACCGAGGGAGTTAATGACAAGAAAGTTGAATTTTATGGAAGATGTGCGCTTCATGGTATTGGCCCTGAATGTCAGTCTGCATATGATCCTACTGATGTGATGGGCAGTCGAGAGGAAAAGGAATTTACCTGTGCTAGGACAGAGGGTTACAAGGGTCGTAGATGTGATGGTATCCATAATAATTATTGCAGTGCCTTAAAACCCCGGGGTGGATACCATGTTCCGGATGAGCAGTTAAATGCTTGGATTCACATAAATGGGCAGAAATTGCGTTCACAAGGAATTCCAAAATTTCCAGATTCAGATATTGAGCGTGATCCTCGGAAAGAATATGTTCGGTATAAACAAGTGAAGGGCTGGAAAAATCTTGTTGTATACAAATCTGGGATACATGGCCTTGGTCTTTATACTTCTCAGTTCATATCTAGGGGTAGAATGGTTGTAGAGTATGTTGGAGAAATTGTGGGGCAACGTGTGGCTGATAAAAGAGAAATTGAATACATATCTGGAATGAAACTTCAGTACAAAAGTGCCTGCTACTTCTTTAAGATAGACAAAGAACATATAATTGATGCCACGAGGAAGGGAGGGATTGCTCGATTTGTTAACCACTCATGTCTGCCAAATTGCGCGGCAAAAGTGATTACTGTTAGGCGTTTGAAGAAGGTTGTCTTCTTTGCGGAGAGGGACATATTACCTGGTGAAGAGATTACTTACGATTACAACTTTAACCGTGAAGATGAAGAAAAGAAAATTCCATGTTACTGCAATTCAAAAAATTGCCGGCGCTCTCTGAACTGA 1119 0.395 MLFYTIETQMPDILEYAEDHKHDLCNKRSKISIQDSANMSIINSDSFCCVCQRSINDEVNSLLECNKCLIKVHQACYGIKALPERGRWCCRPCRTNSKDINLLQNETEGVNDKKVEFYGRCALHGIGPECQSAYDPTDVMGSREEKEFTCARTEGYKGRRCDGIHNNYCSALKPRGGYHVPDEQLNAWIHINGQKLRSQGIPKFPDSDIERDPRKEYVRYKQVKGWKNLVVYKSGIHGLGLYTSQFISRGRMVVEYVGEIVGQRVADKREIEYISGMKLQYKSACYFFKIDKEHIIDATRKGGIARFVNHSCLPNCAAKVITVRRLKKVVFFAERDILPGEEITYDYNFNREDEEKKIPCYCNSKNCRRSLN* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5563 372 ProSiteProfiles SET domain profile. 227 348 IPR001214 GO:0005515
Mal1g5563 372 CDD SET_SETD1-like 219 368 - -
Mal1g5563 372 Gene3D SET domain 197 372 IPR046341 -
Mal1g5563 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 100 IPR013083 -
Mal1g5563 372 SUPERFAMILY SET domain 219 368 IPR046341 -
Mal1g5563 372 SMART PostSET_3 356 372 IPR003616 -
Mal1g5563 372 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 18 100 - -
Mal1g5563 372 ProSiteProfiles Post-SET domain profile. 356 372 IPR003616 -
Mal1g5563 372 SMART set_7 227 354 IPR001214 GO:0005515
Mal1g5563 372 Pfam PHD-finger 60 94 - -
Mal1g5563 372 SUPERFAMILY FYVE/PHD zinc finger 40 97 IPR011011 -
Mal1g5563 372 SMART PHD_3 47 94 IPR001965 -
Mal1g5563 372 Pfam SET domain 238 348 IPR001214 GO:0005515
Mal1g5563 372 ProSitePatterns Zinc finger PHD-type signature. 48 93 IPR019786 -
Mal1g5563 372 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 101 372 - -
Mal1g5563 372 ProSiteProfiles Zinc finger PHD-type profile. 45 96 IPR019787 -
Mal1g5563 372 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 101 372 - -
Mal1g5563 372 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 18 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5563 Mal-Chr1 131105141 131109704 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5563 229 372 C2H2 Transcription Factor Family AT2G23740 34.356 2.23e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal1g5563 SET 2.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5563 - - mtr:MTR_1g012890 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5563 1 131105141 131109704 Mal1g5563 1 131105141 131109704 ECH