Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5559 ATGGGAAAACCAGCTGGAAAAAAGAAGGAACATGAATCACCAAAATCAAACAACAACAACAACAAGAACAAGGGTTACGAACGTTCATCATCATTCGACGATGACACAGCCATGTTCATCAACATGTCACAAGAATTAAGAGAAGAAGGTAACAAACTTTTCTTCCAAAAAAAAGACAATGAAGGAGCTATGTTAAAGTACGAAAAAGCCCTCAAACTCTTACCCAAAAACCACATAGATGTTGCACATCTTCATACCAACATGGCCATGTGTTATATGCAATTGGGTCTTGGTGAATATCCTCGAGCGATTAATGAGTGCAATCTTGCTTTGCAAGTTTCGCCGAGGTATAGTAAAGCTCTTTTGAGAAGAGCTAAGTGTTACGAGGCGTTGAATCGGTTGGATTTGGCTATGAGAGATGTTAGGGTTGTTTTGAATGCTGAGCCGAATAATTCAACCGCTTTGGAGATTCTTGATAGCTTGAGGATTACTATGGAGGAGAAAGGGATTACTATTGATGAGACTGAGATTGCTTTGGCTGCTATTCAGCAAGTAGAGCCGCCTGCTGCGCGGTTTAGGAAAGTTGTTAGGGAGAAGATTAATAAGAAAAAGAAGGGGCTTAAAGGGGAAGGCGAGGAAGAGAGGAAAAGTAAGAATGTTGTTGTTGAGAAGAAAGCCACGAATGTTGGGAATGTTAATGTTAAGGTGAAGGGTAAAGATTCGAAGGATAAGGATAAGGATAGTAGAGAAGTTGTTAAGGAAGATAAAGCGGTTACTAGGACGGTGAAGTTGATATATGGAGAGGATATTAGGTGGGCGCAGTTGCCGGTGAATTGTAGTATGAAGTTGGTGAGGGATGTGATAAGGGATAGGTTTCCGGGGCTGAAGGGTGTTCTGGTTAAGTATAAGGATAGGGAAGGTGATTTGGTTACTATTACTACTACTGCTGAGTTGAGGTTAGCTGAGGGTTGTCATGTGCTTGGTTCGATTCGGTTGTATATTACGCAAGTGGATTTGGATCAGGAGCCGCGTTATGATGAAATGACGAGTAGTGGTGATGTGAGAGGGGAGAATGGGGTTGGAGAAGGAGATAAGGGTGTTGGGGGTAATAGGATGATTACTGTGGAGGAATGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAACCATGTTGGGTTTGATTCTGATTCGTATCTGGATATTCATGAGGTTGGGATGAAGATATATTCAGAGGCGATGGAAGATTCGGTGACCAATGATGGTGCTCAAGAGCTGTTTGATATTGCTGCAGATAAGTTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGGAATGTTCACTTGTCTAAGGCGAGGAGGCGAATGCCTTTTCAGGAGGACGGGTCCAAAGAAGCGTCTTTTGAGCATGTTAAAACTGCATATGAGTGGGCTAAGAAGGAGTACAAGGAAGCGGAAATGAGGTACGAAGAATCTGTTAAAATCAAACCAGACTTTTATGAGGGACTCCTTGCTCTTGGGTATCAGCAGTTTGAGCAAGCAAAGCTATGCTGGTGTTATTTAATTGCAAACAATAAGAATATCGAAGTTGGCCCTTTTGAGGAGGTTCTACAGCTCTATAACAAGGCAGAGGACAGCATGGAGAAAGGGATGTTGATGTGGGAGGAGATTGAGGAACAACGTTTGAATGGATTATCTAAATTAGATAAATATAATGCACAGTTAGAGAAAATGGGTTTGCACGGTCTTTTCAGGGATGTTTCTTCTGATGAAGCTGAAGAGCAGGCTTCAAAGATGAGGATACAGATATATCTTTTGTGGGGTACCTTATTGTACGAGCGTTCTGTTGTGGAATTTAAGCTAGGATTACCAACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCTGGAGCTTCTACAACTGACATTGGTGTCATGATAAAGAACCATTGTTCTAATGAAACAGCAATGGAAGGGTTCAAAATTGATGACATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCAACTTTCCGACTCGAACCATTGTTTCGTCGGCGTGTTCCAAGACTCCATTACATCCTGGAACAATTTTAA 2121 0.4191 MGKPAGKKKEHESPKSNNNNNKNKGYERSSSFDDDTAMFINMSQELREEGNKLFFQKKDNEGAMLKYEKALKLLPKNHIDVAHLHTNMAMCYMQLGLGEYPRAINECNLALQVSPRYSKALLRRAKCYEALNRLDLAMRDVRVVLNAEPNNSTALEILDSLRITMEEKGITIDETEIALAAIQQVEPPAARFRKVVREKINKKKKGLKGEGEEERKSKNVVVEKKATNVGNVNVKVKGKDSKDKDKDSREVVKEDKAVTRTVKLIYGEDIRWAQLPVNCSMKLVRDVIRDRFPGLKGVLVKYKDREGDLVTITTTAELRLAEGCHVLGSIRLYITQVDLDQEPRYDEMTSSGDVRGENGVGEGDKGVGGNRMITVEEWLVQFARLFKNHVGFDSDSYLDIHEVGMKIYSEAMEDSVTNDGAQELFDIAADKFQEMAALALFNWGNVHLSKARRRMPFQEDGSKEASFEHVKTAYEWAKKEYKEAEMRYEESVKIKPDFYEGLLALGYQQFEQAKLCWCYLIANNKNIEVGPFEEVLQLYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDKYNAQLEKMGLHGLFRDVSSDEAEEQASKMRIQIYLLWGTLLYERSVVEFKLGLPTWEECLEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDDIVQAWNEMYDGWQFDVPTFRLEPLFRRRVPRLHYILEQF* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5559 706 Gene3D Tetratricopeptide repeat domain 31 170 IPR011990 GO:0005515
Mal1g5559 706 SUPERFAMILY CAD & PB1 domains 257 347 - -
Mal1g5559 706 CDD PB1 261 334 - -
Mal1g5559 706 Pfam PB1 domain 259 335 IPR000270 GO:0005515
Mal1g5559 706 SMART tpr_5 82 117 IPR019734 GO:0005515
Mal1g5559 706 SMART tpr_5 43 77 IPR019734 GO:0005515
Mal1g5559 706 SMART tpr_5 465 498 IPR019734 GO:0005515
Mal1g5559 706 SMART tpr_5 118 151 IPR019734 GO:0005515
Mal1g5559 706 ProSiteProfiles PB1 domain profile. 259 337 IPR000270 GO:0005515
Mal1g5559 706 MobiDBLite consensus disorder prediction 347 366 - -
Mal1g5559 706 PANTHER PROTEIN PHOX4 1 705 - -
Mal1g5559 706 PANTHER PROTEIN CLMP1 1 705 IPR044517 -
Mal1g5559 706 Gene3D - 251 336 - -
Mal1g5559 706 MobiDBLite consensus disorder prediction 1 31 - -
Mal1g5559 706 SUPERFAMILY TPR-like 41 162 IPR011990 GO:0005515
Mal1g5559 706 SMART PB1_new 259 337 IPR000270 GO:0005515
Mal1g5559 706 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5559 Mal-Chr1 131030201 131032423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5559 31 151 Calmodulin-binding Proteins AT3G25230 32.308 9.41e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5559 - - vra:106765155 985.711