Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5522 ATGGTACAACAAAGTAACAAGTTCAGGGGAGTTAGACAGCGCCAGTGGGGCTCATGGGTCTCAGAAATTCGTCACCCATTACTGAAGAGAAGGGTATGGCTAGGTACATTTGAGACAGCAGAGGCTGCAGCCAGAGCATATGATCAAGCAGCCATTTTGATGAATGGCAAAATTGCCAAAACCAATTTCCCTACACCAAAAGATATTCAAACCGAAGATGCAAATTCCATAACACCAAATTGTTCTGATACTAATAATAACTCTTTCCTCTCTTCAAATGCTCTTTCTAATCTCCTTAAACAAAAACTTACAAAGTGTTGTCAAAAACAATCTCAATCACTCACTTGTTTAAGGCTTGATGCTGATAATTCTCACATAGGAGTGTGGCAAAAGGGAGCAGGATCACATTCTGACTCTAATTGGATCATTAGGGTGGAGCTTGGAAAGAAATTACATGAAGAGGGTCATGAATCAAATTTTGTGTCATCATCAAAAGTATCAACAACACCTAACAGTACTACTACTGTTGGTGATTGTGTTGAAAAAAATGGGCTCGATGATGAAGAGGATATTGTTACCATGCAGATGATTGAAGAGCTACTTAATTGA 609 0.3892 MVQQSNKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGKIAKTNFPTPKDIQTEDANSITPNCSDTNNNSFLSSNALSNLLKQKLTKCCQKQSQSLTCLRLDADNSHIGVWQKGAGSHSDSNWIIRVELGKKLHEEGHESNFVSSSKVSTTPNSTTTVGDCVEKNGLDDEEDIVTMQMIEELLN* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5522 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 202 - -
Mal1g5522 202 MobiDBLite consensus disorder prediction 160 177 - -
Mal1g5522 202 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Mal1g5522 202 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Mal1g5522 202 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Mal1g5522 202 MobiDBLite consensus disorder prediction 156 177 - -
Mal1g5522 202 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Mal1g5522 202 CDD AP2 7 64 IPR001471 GO:0003700|GO:0006355
Mal1g5522 202 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Mal1g5522 202 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Mal1g5522 202 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Mal1g5522 202 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5522 Mal-Chr1 130299967 130301586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5522 4 202 AP2-EREBP Transcription Factor Family AT5G25390 54.271 4.61e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal1g5522 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5522 - - gmx:100784305 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5522 1 130299967 130301586 Mal1g5522 1 130299967 130301586 ECH
Mal2g0876 2 10142490 10143244 Mal1g5522 1 130299967 130301586 ECH
Mal5g4519 5 117300496 117301612 Mal1g5522 1 130299967 130301586 ECH