Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5484 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATTCATGATTACCTTGTGAAGAGGGATTTGAAAGCTTCAGCTCAGGCTTTCCAAGCTGAAGGGAAAGTGTCCTCTGATCCTGTTGCTATTGATGCCCCAGGAGGATTTTTATTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCGAGGACGAACGAGAAGCATTCGGAAGTTGCCGCGTCATATATTGAGACACAGTTAATTAAGGCCAGGGAGCAGCAGCAGCAGCCCCAACCTCAGCAGTCACCACATCAACAACAGCAGCAACAACAACAGCAGATGCAGATGCAACAGATGCTGTTACAGAGGCAACATCAGCAGCAACAACAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAGCATCAACAGCAGCAGCAGCCGCAACATCAGCAGCAACAACAGCAACAGCAACAGCAGGGTAGGGATAGGGCTCATCTCTTGAATGGTGGTGGTGCAAATGGATTAGTTGGAAACCCTAGCACTGCAAATGCAATAGCAACAAAGATGTACGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCTTCTGCAGCTACTGGCCAGCCGTCAGGGCAAGTTTTGCATGGTGCTGCCGGTGCGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACTCCGGATATAAAAAGTGAGATCAATCCTGTATTGAATCCCAGAGCTGCGGGTTCTGAAGGATCATTGATGGCAATTCCTGGATCAAATCAAGGTGGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGGTTGGAGCAACTTCGTTCTGGTTTACTCCAGCAACAAAAACCTTTCATACAATCTCCACAGCCTTTTCATCAACTTCCAATGTTGACACCGCAACATCAGCAACAGCTTATGTTAGCACAGCAAAGCCTTGCATCACCATCTGCCAGTGATGATAGTAGAAGACTCAGAATGCTACTGAATACTAGGAATATGGGTGTAGGTAAGGATGGCCTTTCAAATCCTGTTGGTGATGTAGTATCAAATGTTGGATCGCCCCTTCAAGCAGGTGGTCCACCTTTTCCTCGTGGTGATACAGATATGCTAATGAAGTTGAAACTTGCTCAGTTACAACAGCAGCAGAATGCCAATCCACAACAGCAACAACTTCAACAGCAGCATTCTCTTCCAAATCAGCAATCTCAGTCGGCAAATCATAACATGCACCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGGAGATGGTAGCATGTCAAACTCCTTCAGAGGAAATGATCAGGTTTCCAAAAGCCAGACTGGAAGAAAGAGAAAGCAGACTGTATCTTCTTCTGGTCCTGCTAATAGCTCAGGGACAGCTAATACAGCAGGACCATCTCCGAGTTCAGCACCCTCAACTCCCTCAGGCTCAACTCATACGCCTGGTGATGTGATATCGATGCCTTCTTTACCTCATAATGGTAGTTCTTCAAAGCCATTAATGATGTTTAGCACTGATGGCACCGGAACTCTTACCTCACCTTCAAACCAATTGTGGGATGATAAGGATATTGAATTGCAGGCAGATGTGGACCGCTTTGTAGAGGATGGATCTCTCGATGACAATGTTGAGTCTTTTTTATCGCATGATGATACGGACCCTAGAGATCCAGTTGGGCGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCAGTTCGTGCAAGCACAAGCAAAGTTATTTGTAGCCATTTCTCATCCGACGGAAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACTCTTGAAGAGCATTCATCTTTAATCACGGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCCGGGTTTGGGATGTTGACAATCCTGGGTATTCGCTTCGTACCTTCACTGGGCATTCTGCATCTGTTATGTCACTAGACTTTCATCCTAATAAAGATGACCTTATCTGCTCTTGTGATTGTGATGGCGAGATAAGATATTGGAGTATTAACAATGGCAGTTGTGCTAGAGTGTCGAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGACTAGGTAGATTCCTTGCCGCAGCTGCAGAGAATGTTGTCTCTATACTTGATGTCGAGACACAAGCATGCCGATATTCACTAAAGGGTCACACAAAGTCAATACATTCTGTGTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCTGGGAGTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAACGGAAATAAGTTTCACTCGTGCGTTTTCCATCCAACATATTCTTCATTGTTGGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGACCGAGAACAAGACGATGACTCTGTCTGCTCACGATGGTCTTATTGCCGCGCTGGCCGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2697 0.4572 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQPQPQQSPHQQQQQQQQQMQMQQMLLQRQHQQQQQQQQQQQQQQQQQQQHQQQQQPQHQQQQQQQQQQGRDRAHLLNGGGANGLVGNPSTANAIATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGSEGSLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKPFIQSPQPFHQLPMLTPQHQQQLMLAQQSLASPSASDDSRRLRMLLNTRNMGVGKDGLSNPVGDVVSNVGSPLQAGGPPFPRGDTDMLMKLKLAQLQQQQNANPQQQQLQQQHSLPNQQSQSANHNMHQQDKVGGGGGSVTGDGSMSNSFRGNDQVSKSQTGRKRKQTVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSLPHNGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDIELQADVDRFVEDGSLDDNVESFLSHDDTDPRDPVGRMDVSKGFTFSEVNSVRASTSKVICSHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDCDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRFLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5484 898 CDD WD40 610 898 - -
Mal1g5484 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 656 691 - -
Mal1g5484 898 MobiDBLite consensus disorder prediction 86 113 - -
Mal1g5484 898 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 898 IPR044716 GO:0003714
Mal1g5484 898 ProSitePatterns Trp-Asp (WD) repeats signature. 675 689 IPR019775 -
Mal1g5484 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 866 898 - -
Mal1g5484 898 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 898 - -
Mal1g5484 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 699 741 IPR001680 GO:0005515
Mal1g5484 898 MobiDBLite consensus disorder prediction 459 541 - -
Mal1g5484 898 Pfam WD domain, G-beta repeat 611 645 IPR001680 GO:0005515
Mal1g5484 898 Pfam WD domain, G-beta repeat 861 898 IPR001680 GO:0005515
Mal1g5484 898 Pfam WD domain, G-beta repeat 653 688 IPR001680 GO:0005515
Mal1g5484 898 Pfam WD domain, G-beta repeat 777 811 IPR001680 GO:0005515
Mal1g5484 898 Pfam WD domain, G-beta repeat 695 732 IPR001680 GO:0005515
Mal1g5484 898 MobiDBLite consensus disorder prediction 248 267 - -
Mal1g5484 898 MobiDBLite consensus disorder prediction 230 267 - -
Mal1g5484 898 Coils Coil 112 144 - -
Mal1g5484 898 MobiDBLite consensus disorder prediction 140 180 - -
Mal1g5484 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 656 691 IPR001680 GO:0005515
Mal1g5484 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 655 IPR001680 GO:0005515
Mal1g5484 898 MobiDBLite consensus disorder prediction 414 541 - -
Mal1g5484 898 SMART Lish 8 40 IPR006594 GO:0005515
Mal1g5484 898 MobiDBLite consensus disorder prediction 414 447 - -
Mal1g5484 898 SUPERFAMILY WD40 repeat-like 608 898 IPR036322 GO:0005515
Mal1g5484 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 699 737 - -
Mal1g5484 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 866 898 IPR001680 GO:0005515
Mal1g5484 898 Pfam LisH 10 36 IPR006594 GO:0005515
Mal1g5484 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 781 821 IPR001680 GO:0005515
Mal1g5484 898 Gene3D - 750 898 IPR015943 GO:0005515
Mal1g5484 898 Gene3D - 597 749 IPR015943 GO:0005515
Mal1g5484 898 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Mal1g5484 898 SMART WD40_4 735 771 IPR001680 GO:0005515
Mal1g5484 898 SMART WD40_4 649 688 IPR001680 GO:0005515
Mal1g5484 898 SMART WD40_4 774 812 IPR001680 GO:0005515
Mal1g5484 898 SMART WD40_4 859 898 IPR001680 GO:0005515
Mal1g5484 898 SMART WD40_4 692 732 IPR001680 GO:0005515
Mal1g5484 898 SMART WD40_4 607 646 IPR001680 GO:0005515
Mal1g5484 898 SMART WD40_4 818 857 IPR001680 GO:0005515
Mal1g5484 898 MobiDBLite consensus disorder prediction 140 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5484 Mal-Chr1 129761918 129772540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5484 632 861 U-box Gene Family AT2G33340 31.707 6.04e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mal1g5484 WD40 0.048 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5484 - - gmx:100779972 1263.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5484 1 129761918 129772540 Mal2g0839 2 9708443 9715486 PCT