Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5474 ATGGAGCGACTCGGGAGCATCAGTCACAGTCATGTTATAGAAATAGATGGGAGTGTTGAGGCTTCTACATCTGCCTCATCTCGTGATAGAAATATTAATGGTGCAGACACGCCGCATCGTGAAGAAAGAGTAAGTGGTGCACGGTTGGCTGTTGGTCAGCCTTCGGTTTCAACCTCGGGTGTATCAACTGGATCAAATAGCAGGAATTCTTCGTTTGTAAGACGAGGGGACGCTCGTCGGAGTAGGAGTCCTGTGCATTCTGGGTTATGGATATCTATTGAGCTAGTCCTATTAGTAAGCCAGATTGTTGCATCTATCGTTGTTCTGTCATTGTCAAGGAATGAGCATCCACATACCCCGTTGTTTCAATGGATAGTCGGCTATGCTTCTGGTTGTGTTGCTACCCTCCCTCTTCTTTTTTGGCGGTATTATAATCATAACCATCTGCGAGAACAAGATTCAGCTCAGTCACGTCAAACATCTCCTCGGATTAGTGATCCTTCTGGGACATTTCTTTCGATTTCCAGAAATAATGGAGGAGATGCTGGTCAGGCTGCTGCTGCATCCTCCAGAAGTAATCAAGCTTCAATATTGATGAATAGAAGAATGATCATACTTGTGGAATACTTCAAAATATCCTTAGATTGCTTTTTTGCTGTGTGGTTTGTTGTTGGAAACGTATGGATCTTTGGGGGACGTTCTTCTGCTGATGTAGCTCCTAACTTGTATAGGTTGTGTATAGTGTTTCTCGCATTTAGCTGTATTGGTTATGCCATGCCTTTCATTCTCTGTTCAACCATCTGCTGTTGTCTCCCGTGTATAATTTCCATCCTTGGCGTTAGAGAGGATCTGACACAAAACAGAGGAGCAACTTCTGAATCCATTAATGCTCTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATAGTGAAACCAACTCTGCTAATATAGAAGGTGGAACTGTGGCTGCAGGAACTGAAAAAGAGCGCGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGTCTGGCAAAGTATGAAAATAATGATGAGCTGAGAGAATTACCCTGTTCTCATCTTTTCCACAAAGATTGCGTTGATAAGTGGTTGAAGATAAATGCATTGTGCCCGCTTTGCAAGAGTGAGGTTGGTGAAGACCTAACAAGATTGGGGTCTGGAGAAGATGCCGCCCAAACAACGGGATGA 1212 0.434 MERLGSISHSHVIEIDGSVEASTSASSRDRNINGADTPHREERVSGARLAVGQPSVSTSGVSTGSNSRNSSFVRRGDARRSRSPVHSGLWISIELVLLVSQIVASIVVLSLSRNEHPHTPLFQWIVGYASGCVATLPLLFWRYYNHNHLREQDSAQSRQTSPRISDPSGTFLSISRNNGGDAGQAAAASSRSNQASILMNRRMIILVEYFKISLDCFFAVWFVVGNVWIFGGRSSADVAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLTQNRGATSESINALPTYKFKMKKNKRNSETNSANIEGGTVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGEDLTRLGSGEDAAQTTG* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5474 403 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 403 - -
Mal1g5474 403 SMART ring_2 341 381 IPR001841 -
Mal1g5474 403 MobiDBLite consensus disorder prediction 18 78 - -
Mal1g5474 403 Pfam Ring finger domain 341 382 IPR001841 -
Mal1g5474 403 MobiDBLite consensus disorder prediction 51 72 - -
Mal1g5474 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 388 IPR013083 -
Mal1g5474 403 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 403 - -
Mal1g5474 403 SUPERFAMILY RING/U-box 332 388 - -
Mal1g5474 403 MobiDBLite consensus disorder prediction 18 32 - -
Mal1g5474 403 ProSiteProfiles Zinc finger RING-type profile. 341 382 IPR001841 -
Mal1g5474 403 CDD RING-H2_RNF111_like 340 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5474 Mal-Chr1 129604869 129608659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5474 74 387 C3H Transcription Factor Family AT1G80400 58.307 6.41e-139 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5474 - - gmx:100778728 622.083